Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18038_v3 Cicer arietinum L. HOM05D001171 ORTHO05D006126 2.0e-92 342.4 173 100.0
Psat7g077720 Pisum sativum HOM05D001171 ORTHO05D006126 1.6e-81 306.2 170 89.4
Medtr8g080470 Medicago truncatula HOM05D001171 ORTHO05D006126 1.5e-79 299.7 170 88.2
TPR.G17090 Trifolium pratense HOM05D001171 ORTHO05D006126 1.5e-79 299.7 170 88.8
Glyma.05G146600 Glycine max HOM05D001171 ORTHO05D006126 2.7e-73 278.9 166 85.5
Glyma.08G103300 Glycine max HOM05D001171 ORTHO05D006126 3.5e-73 278.5 166 84.9
Phvul.002G174700 Phaseolus vulgaris HOM05D001171 ORTHO05D006126 1.3e-70 270.0 166 81.9
Lalb_Chr12g0206251 Lupinus albus HOM05D001171 ORTHO05D006126 7.6e-68 260.8 171 75.4
Lalb_Chr13g0294301 Lupinus albus HOM05D001171 ORTHO05D006126 9.9e-68 260.4 170 75.3
Prupe.1G227300 Prunus persica HOM05D001171 ORTHO05D006126 4.9e-67 258.1 170 77.1
Lj4g0002448 Lotus japonicus HOM05D001171 ORTHO05D006126 2.4e-66 255.8 168 76.2
Sed0016407 Sechium edule HOM05D001171 ORTHO05D006126 2.4e-66 255.8 170 73.5
Thecc.02G210400 Theobroma cacao HOM05D001171 ORTHO05D006126 2.4e-66 255.8 161 76.4
Duzib268G1390 Durio zibethinus HOM05D001171 ORTHO05D006126 1.6e-65 253.1 170 74.1
Actinidia09656 Actinidia chinensis HOM05D001171 ORTHO05D006126 3.5e-65 251.9 164 75.0
Dinv10966 Davidia involucrata HOM05D001171 ORTHO05D006126 1.3e-64 250.0 164 74.4
Actinidia20704 Actinidia chinensis HOM05D001171 ORTHO05D006126 2.3e-64 249.2 164 73.2
CsaV3_6G032260 Cucumis sativus L. HOM05D001171 ORTHO05D006126 2.3e-64 249.2 164 72.6
MELO3C011454.2 Cucumis melo HOM05D001171 ORTHO05D006126 3.9e-64 248.4 170 72.4
GSVIVG01010452001 Vitis vinifera HOM05D001171 ORTHO05D006126 5.1e-64 248.1 170 72.4
Atru.chr11.2309 Acer truncatum HOM05D001171 ORTHO05D006126 1.5e-63 246.5 170 72.9
arahy.Tifrunner.gnm1.ann1.2F0YN9 Arachis hypogaea HOM05D001171 ORTHO05D006126 1.9e-63 246.1 171 73.1
arahy.Tifrunner.gnm1.ann1.8PLQ7K Arachis hypogaea HOM05D001171 ORTHO05D006126 1.9e-63 246.1 171 73.1
Duzib248G1370 Durio zibethinus HOM05D001171 ORTHO05D006126 1.9e-63 246.1 170 73.5
Rhsim12G0099100 Rhododendron simsii HOM05D001171 ORTHO05D006126 3.3e-63 245.4 164 73.2
CANSAT01G1884 Cannabis sativa HOM05D001171 ORTHO05D006126 9.6e-63 243.8 164 73.2
Lj3C1067G5 Lonicera japonica HOM05D001171 ORTHO05D006126 9.6e-63 243.8 170 71.8
QL03p053673 Quercus lobata HOM05D001171 ORTHO05D006126 9.6e-63 243.8 164 70.1
TWI36G0373 Tripterygium wilfordii HOM05D001171 ORTHO05D006126 9.6e-63 243.8 170 71.2
Cc00_g13520 Coffea canephora HOM05D001171 ORTHO05D006126 1.6e-62 243.0 164 72.6
CiPaw.05G111400 Carya illinoinensis HOM05D001171 ORTHO05D006126 6.2e-62 241.1 170 69.4
Lsat_1_v5_gn_8_149401 Lactuca sativa HOM05D001171 ORTHO05D006126 6.2e-62 241.1 164 70.7
Gohir.A05G310900 Gossypium hirsutum HOM05D001171 ORTHO05D006126 8.1e-62 240.7 161 73.9
MD13G1117700 Malus domestica HOM05D001171 ORTHO05D006126 1.1e-61 240.4 170 70.6
TAR622G0378 Trochodendron aralioides HOM05D001171 ORTHO05D006126 1.1e-61 240.4 170 72.9
Gohir.D05G311700 Gossypium hirsutum HOM05D001171 ORTHO05D006126 1.4e-61 240.0 161 73.9
MSTRG.2457 Avicennia marina HOM05D001171 ORTHO05D006126 1.8e-61 239.6 164 72.6
CiPaw.06G101600 Carya illinoinensis HOM05D001171 ORTHO05D006126 1.8e-61 239.6 164 70.7
Gorai.009G332800 Gossypium raimondii HOM05D001171 ORTHO05D006126 3.1e-61 238.8 161 73.3
HanXRQChr08g0207751 Helianthus annuus HOM05D001171 ORTHO05D006126 3.1e-61 238.8 164 70.7
Cfa009328 Carpinus fangiana HOM05D001171 ORTHO05D006126 5.3e-61 238.0 164 68.9
ClCG08G010100 Citrullus lanatus HOM05D001171 ORTHO05D006126 5.3e-61 238.0 163 72.4
MD16G1117900 Malus domestica HOM05D001171 ORTHO05D006126 5.3e-61 238.0 170 70.6
Cpa.g.sc43.41 Carica papaya HOM05D001171 ORTHO05D006126 6.9e-61 237.7 161 71.4
Hund06085 Selenicereus undatus HOM05D001171 ORTHO05D006126 9.0e-61 237.3 161 70.2
FAN17G1139 Fragaria x ananassa HOM05D001171 ORTHO05D006126 2.0e-60 236.1 161 68.3
RcHm_v2.0_Chr4g0430551 Rosa chinensis HOM05D001171 ORTHO05D006126 2.0e-60 236.1 163 68.1
Oeu058919.3 Olea europaea HOM05D001171 ORTHO05D006126 2.6e-60 235.7 170 68.2
Lj6A825T69 Lonicera japonica HOM05D001171 ORTHO05D006126 3.4e-60 235.3 164 70.7
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.3e-59 233.4 161 68.9
Haze_12401 Corylus avellana HOM05D001171 ORTHO05D006126 1.3e-59 233.4 164 67.7
FvH4_4g23910 Fragaria vesca HOM05D001171 ORTHO05D006126 1.3e-59 233.4 161 67.1
Sabra08G0133800 Salix brachista HOM05D001171 ORTHO05D006126 1.3e-59 233.4 164 67.7
AT1G67420 Arabidopsis thaliana HOM05D001171 ORTHO05D006126 2.2e-59 232.6 170 65.9
Haze_12399 Corylus avellana HOM05D001171 ORTHO05D006126 2.2e-59 232.6 164 67.1
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 3.8e-59 231.9 164 67.7
Potri.010G060500 Populus trichocarpa HOM05D001171 ORTHO05D006126 3.8e-59 231.9 164 68.9
CSS0006395 Camellia sinensis var. sinensis HOM05D001171 ORTHO05D006126 4.9e-59 231.5 159 71.7
CSS0011449 Camellia sinensis var. sinensis HOM05D001171 ORTHO05D006126 4.9e-59 231.5 159 71.7
Carub.0002s1375 Capsella rubella HOM05D001171 ORTHO05D006126 4.9e-59 231.5 169 66.3
Nn3g16495 Nelumbo nucifera HOM05D001171 ORTHO05D006126 4.9e-59 231.5 164 69.5
vmacro16110 Vaccinium macrocarpon HOM05D001171 ORTHO05D006126 4.9e-59 231.5 181 66.3
BraA07t31024Z Brassica rapa HOM05D001171 ORTHO05D006126 6.5e-59 231.1 170 67.6
Nitab4.5_0001098g0060 Nicotiana tabacum HOM05D001171 ORTHO05D006126 6.5e-59 231.1 164 67.7
FAN07G0777 Fragaria x ananassa HOM05D001171 ORTHO05D006126 8.4e-59 230.7 161 66.5
Ciclev10030679m.g Citrus clementina HOM05D001171 ORTHO05D006126 1.4e-58 229.9 170 68.2
Eucgr.B03486 Eucalyptus grandis HOM05D001171 ORTHO05D006126 1.4e-58 229.9 170 65.3
CAN.G828.1 Capsicum annuum HOM05D001171 ORTHO05D006126 1.9e-58 229.6 163 67.5
Peaxi162Scf00518g00436 Petunia axillaris HOM05D001171 ORTHO05D006126 1.9e-58 229.6 164 67.1
Potri.008G175400 Populus trichocarpa HOM05D001171 ORTHO05D006126 1.9e-58 229.6 164 67.7
Solyc12g035490.1 Solanum lycopersicum HOM05D001171 ORTHO05D006126 2.5e-58 229.2 164 67.1
Sopen12g015420 Solanum pennellii HOM05D001171 ORTHO05D006126 2.5e-58 229.2 164 67.1
A07p33970 Brassica napus HOM05D001171 ORTHO05D006126 3.2e-58 228.8 170 66.5
Gohir.A01G160800 Gossypium hirsutum HOM05D001171 ORTHO05D006126 5.5e-58 228.0 163 71.2
COL.COLO4_20384 Corchorus olitorius HOM05D001171 ORTHO05D006126 7.1e-58 227.6 170 69.4
Migut.E00023 Erythranthe guttata HOM05D001171 ORTHO05D006126 7.1e-58 227.6 164 67.7
Nitab4.5_0000011g0280 Nicotiana tabacum HOM05D001171 ORTHO05D006126 9.3e-58 227.3 164 67.1
EL10Ac6g13486 Beta vulgaris HOM05D001171 ORTHO05D006126 1.2e-57 226.9 161 68.9
BcaC08g46164 Brassica carinata HOM05D001171 ORTHO05D006126 2.7e-57 225.7 170 65.9
C06p42880 Brassica napus HOM05D001171 ORTHO05D006126 2.7e-57 225.7 170 65.9
BolC6t39150H Brassica oleracea HOM05D001171 ORTHO05D006126 2.7e-57 225.7 170 65.9
Thhalv10018109m.g Eutrema salsugineum HOM05D001171 ORTHO05D006126 2.7e-57 225.7 170 64.7
MBI11_g07459_MAGBIO Magnolia biondii HOM05D001171 ORTHO05D006126 2.7e-57 225.7 161 67.1
Sc11g0000480 Simmondsia chinensis HOM05D001171 ORTHO05D006126 2.7e-57 225.7 164 68.3
THA.LOC104825512 Tarenaya hassleriana HOM05D001171 ORTHO05D006126 2.7e-57 225.7 161 67.1
SalBow8G5464 Salvia bowleyana HOM05D001171 ORTHO05D006126 6.0e-57 224.6 164 66.5
AUR62005606 Chenopodium quinoa HOM05D001171 ORTHO05D006126 7.9e-57 224.2 163 66.3
Sabra10G0045500 Salix brachista HOM05D001171 ORTHO05D006126 7.9e-57 224.2 164 67.1
Aqoxy5G03404 Aquilegia oxysepala HOM05D001171 ORTHO05D006126 1.3e-56 223.4 164 64.0
BcaB03g15201 Brassica carinata HOM05D001171 ORTHO05D006126 1.3e-56 223.4 170 64.7
AUR62024123 Chenopodium quinoa HOM05D001171 ORTHO05D006126 5.1e-56 221.5 163 66.3
Aa31sc475G10 Aethionema arabicum HOM05D001171 ORTHO05D006126 6.7e-56 221.1 189 61.4
A07p32560 Brassica napus HOM05D001171 ORTHO05D006126 1.1e-55 220.3 161 65.2
BolC6t38960H Brassica oleracea HOM05D001171 ORTHO05D006126 4.3e-55 218.4 164 64.0
PGR102G0186 Punica granatum HOM05D001171 ORTHO05D006126 4.3e-55 218.4 170 62.9
BraA07t30880Z Brassica rapa HOM05D001171 ORTHO05D006126 5.7e-55 218.0 164 64.0
C06p38700 Brassica napus HOM05D001171 ORTHO05D006126 1.3e-54 216.9 164 63.4
BcaB03g15356 Brassica carinata HOM05D001171 ORTHO05D006126 2.8e-54 215.7 159 64.8
PSO063G5985 Papaver somniferum HOM05D001171 ORTHO05D006126 1.1e-53 213.8 164 64.0
SGA_v2.0_scaffold87G27147 Striga asiatica HOM05D001171 ORTHO05D006126 1.8e-53 213.0 199 57.3
PSO782G3690 Papaver somniferum HOM05D001171 ORTHO05D006126 2.4e-53 212.6 164 64.0
VMungo0251G0779 Vigna mungo HOM05D001171 ORTHO05D006126 1.0e-51 207.2 131 79.4
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 2.5e-50 202.6 159 59.7
HPP92_007002 Vanilla planifolia HOM05D001171 ORTHO05D006126 5.5e-50 201.4 161 57.8
Manes.12G012600 Manihot esculenta HOM05D001171 ORTHO05D006126 1.0e-48 197.2 164 62.8
ATR0561G160 Amborella trichopoda HOM05D001171 ORTHO05D006126 1.3e-48 196.8 144 64.6
Os07g0295800 Oryza sativa ssp. japonica HOM05D001171 ORTHO05D006126 3.1e-45 185.7 154 61.0
SMO116G0357 Selaginella moellendorffii HOM05D001171 ORTHO05D006126 7.9e-41 171.0 166 53.6
Hma1.2p1_0065F.1_g035610 Hydrangea macrophylla HOM05D001171 ORTHO05D006126 5.7e-39 164.9 110 73.6
Mapoly0009s0031 Marchantia polymorpha HOM05D001171 ORTHO05D006126 1.8e-37 159.8 154 48.7
SHI17957 Sapria himalayana HOM05D001171 ORTHO05D006126 3.2e-34 149.1 154 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2095 Anthoceros agrestis HOM05D001171 ORTHO05D006126 2.7e-33 146.0 154 48.1
CDE05G2832 Ceratophyllum demersum HOM05D001171 ORTHO05D006126 1.0e-32 144.1 162 48.1
Pp3c11_25820 Physcomitrium patens HOM05D001171 ORTHO05D006126 2.6e-31 139.4 154 45.5
Gohir.A05G358801 Gossypium hirsutum HOM05D001171 ORTHO05D006126 8.2e-30 134.4 105 63.8
unitig_744.g24422 Utricularia gibba HOM05D001171 ORTHO05D006126 3.7e-22 109.0 95 58.9
CARHR059950 Cardamine hirsuta HOM05D001171 ORTHO05D006126 1.6e-20 103.6 67 70.1
Sp5g22350 Schrenkiella parvula HOM05D001171 ORTHO05D006126 1.6e-17 93.6 56 76.8
VMungo0251G3321 Vigna mungo HOM05D001171 ORTHO05D006126 8.5e-11 71.2 47 74.5
MCO03G206 Micromonas commoda HOM05D001171 ORTHO05D006126 1.1e-10 70.9 70 45.7
SMO364G0963 Selaginella moellendorffii HOM05D002510 ORTHO05D007210 1.5e-10 70.5 149 34.9
AagrBONN_evm.TU.Sc2ySwM_344.3754 Anthoceros agrestis HOM05D002510 ORTHO05D007210 7.2e-10 68.2 125 32.8
MD14G1115000 Malus domestica HOM05D001171 ORTHO05D006126 4.7e-09 65.5 62 54.8
Peaxi162Scf01719g00012 Petunia axillaris HOM05D002510 ORTHO05D007210 4.7e-09 65.5 163 31.3
CBR_g21981 Chara braunii HOM05D000505 ORTHO05D000301 8.0e-09 64.7 88 37.5
Nitab4.5_0000534g0010 Nicotiana tabacum HOM05D002510 ORTHO05D007210 8.0e-09 64.7 163 30.7
Solyc04g025260.3 Solanum lycopersicum HOM05D002510 ORTHO05D007210 2.3e-08 63.2 123 38.2
Sopen04g011710 Solanum pennellii HOM05D002510 ORTHO05D007210 3.0e-08 62.8 123 38.2
SalBow3G0762 Salvia bowleyana HOM05D002510 ORTHO05D007210 5.2e-08 62.0 165 30.9
Aa31LG1G20400 Aethionema arabicum HOM05D002510 ORTHO05D007210 8.8e-08 61.2 162 32.1
Manes.10G046400 Manihot esculenta HOM05D002510 ORTHO05D007210 1.2e-07 60.8 161 30.4
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 2.0e-07 60.1 123 34.1
TPR.G1937 Trifolium pratense HOM05D002510 ORTHO05D007210 2.0e-07 60.1 123 33.3
SHI17955 Sapria himalayana HOM05D001171 ORTHO05D006126 2.6e-07 59.7 35 77.1
Medtr1g095040 Medicago truncatula HOM05D002510 ORTHO05D007210 3.4e-07 59.3 172 30.8
vmacro08076 Vaccinium macrocarpon HOM05D001171 ORTHO05D006126 3.4e-07 59.3 64 57.8
PSO339G3140 Papaver somniferum HOM05D002510 ORTHO05D007210 5.7e-07 58.5 125 31.2
PSO384G1458 Papaver somniferum HOM05D002510 ORTHO05D007210 5.7e-07 58.5 125 31.2
Psat6g183520 Pisum sativum HOM05D002510 ORTHO05D007210 2.2e-06 56.6 123 32.5
Pp3c15_14500 Physcomitrium patens HOM05D002510 ORTHO05D007210 2.8e-06 56.2 124 32.3
Glyma.10G210900 Glycine max HOM05D002510 ORTHO05D007210 3.7e-06 55.8 158 32.3
VMungo0720G2840 Vigna mungo HOM05D002510 ORTHO05D007210 4.9e-06 55.5 174 31.0


User provided reference genes

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