Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 0.0e+00 1795.4 932 100.0
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.9e-269 932.9 1004 57.8
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 3.3e-250 869.0 1017 54.8
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 5.1e-235 818.5 1134 48.7
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 2.2e-230 803.1 1140 49.7
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 7.9e-220 768.1 1123 46.9
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 5.3e-216 755.4 1131 47.6
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.2e-214 750.0 1156 46.5
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 9.1e-184 648.3 749 55.0
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 9.5e-157 558.5 1181 38.2
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 5.2e-155 552.7 1170 38.3
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 2.6e-114 417.5 806 41.4
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 9.3e-104 382.5 1020 34.7
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 4.3e-101 373.6 1021 34.7
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 7.2e-96 356.3 1131 31.4
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.3e-89 335.5 1207 30.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 2.2e-89 334.7 1219 28.8
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 3.0e-86 324.3 1121 31.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 2.9e-81 307.8 1061 31.7
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 8.5e-81 306.2 994 32.3
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.1e-75 287.3 1068 27.9
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 2.6e-74 284.6 1048 29.6
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.0e-73 282.7 984 30.4
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.7e-73 282.0 1105 28.7
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.9e-73 281.2 976 30.4
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 2.1e-71 275.0 1004 29.5
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.3e-68 265.8 1237 27.8
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.8e-68 264.6 1051 28.4
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 8.3e-68 263.1 1227 28.4
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.0e-67 260.0 1021 27.9
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 9.1e-67 259.6 1229 28.3
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 8.5e-65 253.1 1041 28.1
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 3.2e-64 251.1 1221 27.8
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.5e-64 250.4 980 29.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.3e-62 245.0 967 29.2
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 2.3e-62 245.0 1053 29.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.5e-61 242.3 1114 28.5
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.0e-61 241.9 1058 26.1
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 2.0e-61 241.9 1067 28.8
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.3e-60 239.2 977 28.4
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 2.2e-60 238.4 1122 26.9
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 4.8e-60 237.3 1028 26.4
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 6.3e-60 236.9 1029 27.1
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.1e-59 234.6 999 26.4
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 7.0e-59 233.4 1331 25.1
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 7.7e-58 229.9 1112 27.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.9e-57 228.0 1276 26.6
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 5.5e-56 223.8 1042 25.8
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 3.6e-55 221.1 238 56.7
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.6e-55 221.1 1134 27.3
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 2.3e-54 218.4 1043 27.9
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.2e-53 216.1 1082 27.6
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.5e-53 215.7 1022 27.8
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.7e-53 213.8 1078 27.1
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.2e-52 211.8 1105 26.4
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 3.7e-52 211.1 1054 26.0
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 4.9e-52 210.7 1117 26.5
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 8.3e-52 209.9 1116 25.4
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.2e-50 206.1 588 31.6
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.6e-50 205.7 984 27.3
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 8.6e-49 199.9 1047 26.4
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.5e-48 198.4 1004 27.5
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.2e-47 196.1 1113 27.5
Ca_13654_v3 Cicer arietinum L. HOM05D000161 ORTHO05D000111 1.6e-47 195.7 191 63.4
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.4e-46 192.6 802 28.8
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.9e-46 189.9 1015 27.2
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.4e-45 188.0 995 27.1
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 4.9e-44 184.1 427 36.3
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.9e-43 182.2 1070 24.4
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 5.4e-43 180.6 227 52.9
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 4.6e-42 177.6 717 29.8
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 4.6e-42 177.6 1104 24.6
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 3.9e-41 174.5 1014 25.3
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.6e-41 173.3 792 29.2
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 7.3e-40 170.2 1000 26.8
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 9.5e-40 169.9 1014 26.1
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 8.0e-39 166.8 241 43.6
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 1.1e-38 166.4 850 28.4
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.1e-38 166.4 907 27.7
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.8e-38 165.6 797 26.5
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.2e-37 162.9 1079 24.8
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.6e-37 161.8 1055 24.7
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.4e-37 161.4 935 24.6
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 5.8e-37 160.6 308 40.3
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 5.8e-37 160.6 291 40.2
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.3e-36 159.5 1092 24.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 3.7e-36 157.9 121 66.9
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 8.3e-36 156.8 386 32.4
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 8.3e-36 156.8 1130 24.8
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.2e-34 152.9 332 35.2
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 4.6e-34 151.0 278 40.6
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.6e-31 142.5 717 26.1
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 8.1e-31 140.2 147 53.1
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 8.9e-30 136.7 189 43.4
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 2.0e-29 135.6 970 23.3
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 2.6e-29 135.2 377 34.2
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.6e-29 135.2 963 24.9
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 7.6e-29 133.7 956 24.2
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 9.9e-29 133.3 959 24.2
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 4.9e-28 131.0 959 24.6
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 7.1e-27 127.1 185 42.2
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 9.2e-27 126.7 197 39.6
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 3.5e-26 124.8 970 23.9
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.7e-25 122.5 964 24.0
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.5e-24 119.4 939 23.1
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.9e-24 119.0 1036 24.6
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.5e-24 118.6 287 36.2
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 6.8e-22 110.5 977 23.8
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 8.9e-22 110.2 874 24.7
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.2e-21 109.8 960 23.8
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 2.0e-21 109.0 938 23.6
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 4.9e-20 104.4 156 42.3
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.9e-19 102.4 959 22.6
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 2.4e-19 102.1 64 75.0
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 3.2e-19 101.7 106 49.1
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.2e-19 101.3 942 22.8
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 4.2e-19 101.3 540 24.6
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 7.1e-19 100.5 156 41.0
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 7.1e-19 100.5 978 22.9
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 1.6e-18 99.4 232 34.5
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 2.1e-18 99.0 233 35.2
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 2.7e-18 98.6 942 23.9
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 4.6e-18 97.8 140 44.3
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.0e-17 96.7 959 22.0
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.0e-17 95.1 190 36.3
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 8.7e-17 93.6 950 22.0
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.9e-16 92.4 981 23.9
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.9e-16 92.4 66 60.6
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 2.5e-16 92.0 966 24.2
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 2.5e-16 92.0 235 32.3
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 5.6e-16 90.9 251 33.5
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 2.8e-15 88.6 153 37.3
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 2.8e-15 88.6 966 24.1
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.4e-14 86.3 973 21.5
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.8e-14 85.9 127 38.6
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 3.8e-12 78.2 39 76.9
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 1.1e-11 76.6 638 23.5
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.9e-11 75.9 989 22.5
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 2.1e-10 72.4 662 23.7
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.1e-10 72.4 991 21.1
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 3.5e-10 71.6 44 59.1
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 1.7e-09 69.3 114 38.6
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.1e-08 66.6 52 53.8
arahy.Tifrunner.gnm1.ann1.JXU29S Arachis hypogaea HOM05D005839 ORTHO05D005686 4.8e-07 61.2 159 35.2
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 1.1e-06 60.1 57 42.1
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.8e-06 59.3 31 67.7
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 2.4e-06 58.9 73 42.5
SMO347G0454 Selaginella moellendorffii HOM05D002473 ORTHO05D002666 5.3e-06 57.8 43 51.2


User provided reference genes

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