Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18004_v3 Cicer arietinum L. HOM05D007138 ORTHO05D009148 0.0e+00 2157.5 1133 100.0
Medtr8g083310 Medicago truncatula HOM05D007138 ORTHO05D009148 3.1e-311 1072.0 1206 56.1
Psat0s4823g0040 Pisum sativum HOM05D007138 ORTHO05D009148 1.3e-309 1066.6 1255 54.1
Lj4g0024791 Lotus japonicus HOM05D007138 ORTHO05D009148 9.2e-247 857.8 1289 45.7
Glyma.08G107400 Glycine max HOM05D007138 ORTHO05D009148 3.2e-223 779.6 1229 44.2
Glyma.05G150500 Glycine max HOM05D007138 ORTHO05D009148 7.6e-217 758.4 1229 43.3
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 9.3e-199 698.4 651 61.0
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 2.0e-193 680.6 953 45.4
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 2.7e-190 670.2 1286 39.5
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 3.6e-190 669.8 1278 39.7
Phvul.003G291400 Phaseolus vulgaris HOM05D007138 ORTHO05D009148 1.8e-162 577.8 1199 38.6
VMungo0251G1281 Vigna mungo HOM05D007138 ORTHO05D009148 2.2e-123 448.0 1043 36.9
TPR.G636 Trifolium pratense HOM05D007138 ORTHO05D009148 8.1e-118 429.5 584 47.9
Lalb_Chr12g0205841 Lupinus albus HOM05D007138 ORTHO05D009148 4.9e-99 367.1 415 52.5
Lalb_Chr12g0205851 Lupinus albus HOM05D007138 ORTHO05D009148 8.7e-88 329.7 502 43.2
Haze_11677 Corylus avellana HOM05D007138 ORTHO05D009148 8.8e-64 250.0 755 30.1
Cfa008656 Carpinus fangiana HOM05D007138 ORTHO05D009148 1.8e-61 242.3 705 31.5
QL06p027005 Quercus lobata HOM05D007138 ORTHO05D009148 3.1e-61 241.5 703 32.0
CiPaw.01G114100 Carya illinoinensis HOM05D007138 ORTHO05D009148 2.2e-59 235.3 694 31.4
Prupe.1G169400 Prunus persica HOM05D007138 ORTHO05D009148 3.7e-54 218.0 686 31.0
MD04G1019900 Malus domestica HOM05D007138 ORTHO05D009148 4.8e-54 217.6 769 28.9
Thecc.04G192200 Theobroma cacao HOM05D007138 ORTHO05D009148 1.0e-51 209.9 783 28.2
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 1.3e-51 209.5 213 57.3
Atru.chr3.1784 Acer truncatum HOM05D007138 ORTHO05D009148 3.2e-50 204.9 372 36.6
Gohir.A09G207700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 7.2e-50 203.8 744 27.8
Potri.002G236300 Populus trichocarpa HOM05D007138 ORTHO05D009148 2.7e-49 201.8 784 28.8
Dinv27178 Davidia involucrata HOM05D007138 ORTHO05D009148 4.7e-49 201.1 453 33.1
Gorai.006G224900 Gossypium raimondii HOM05D007138 ORTHO05D009148 8.8e-48 196.8 750 28.1
Gohir.D09G201200 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.2e-47 196.4 746 27.9
Eucgr.H02635 Eucalyptus grandis HOM05D007138 ORTHO05D009148 2.0e-47 195.7 796 27.3
RcHm_v2.0_Chr4g0412661 Rosa chinensis HOM05D007138 ORTHO05D009148 3.4e-47 194.9 695 29.4
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 4.8e-46 191.0 705 29.1
Sabra02G0180000 Salix brachista HOM05D007138 ORTHO05D009148 6.3e-46 190.7 724 28.3
FAN07G0102 Fragaria x ananassa HOM05D007138 ORTHO05D009148 1.1e-45 189.9 374 36.4
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 1.4e-45 189.5 705 28.9
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 2.4e-45 188.7 301 41.5
GSVIVG01031579001 Vitis vinifera HOM05D007138 ORTHO05D009148 2.4e-45 188.7 350 38.9
Migut.G00946 Erythranthe guttata HOM05D007138 ORTHO05D009148 7.0e-45 187.2 309 38.8
Manes.01G054400 Manihot esculenta HOM05D007138 ORTHO05D009148 4.5e-44 184.5 564 31.7
PGR083G1257 Punica granatum HOM05D007138 ORTHO05D009148 2.3e-43 182.2 587 29.8
Cpa.g.sc157.22 Carica papaya HOM05D007138 ORTHO05D009148 1.9e-42 179.1 449 33.4
EL10Ac3g07428 Beta vulgaris HOM05D007138 ORTHO05D009148 3.0e-40 171.8 430 32.3
Gorai.005G025100 Gossypium raimondii HOM05D007138 ORTHO05D009148 4.0e-40 171.4 343 35.3
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 6.8e-40 170.6 736 25.7
Gohir.A02G017700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.2e-39 169.9 308 38.6
Gohir.D02G019900 Gossypium hirsutum HOM05D007138 ORTHO05D009148 3.4e-39 168.3 342 34.8
Duzib151G0530 Durio zibethinus HOM05D007138 ORTHO05D009148 4.4e-39 167.9 847 26.6
Oeu034315.1 Olea europaea HOM05D007138 ORTHO05D009148 9.8e-39 166.8 148 58.8
Hund25334 Selenicereus undatus HOM05D007138 ORTHO05D009148 1.3e-38 166.4 141 59.6
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 3.7e-38 164.9 522 29.7
SalBow2G0985 Salvia bowleyana HOM05D007138 ORTHO05D009148 4.9e-38 164.5 357 35.0
ClCG06G003170 Citrullus lanatus HOM05D007138 ORTHO05D009148 8.3e-38 163.7 169 52.1
Cc03_g09210 Coffea canephora HOM05D007138 ORTHO05D009148 1.4e-37 162.9 475 31.6
Hma1.2p1_1457F.1_g284650 Hydrangea macrophylla HOM05D007138 ORTHO05D009148 1.8e-37 162.5 353 34.6
Sp3g21450 Schrenkiella parvula HOM05D007138 ORTHO05D009148 1.8e-37 162.5 335 37.6
CANSAT78G1621 Cannabis sativa HOM05D007138 ORTHO05D009148 4.1e-37 161.4 198 47.0
SalBow2G2858 Salvia bowleyana HOM05D007138 ORTHO05D009148 9.2e-37 160.2 431 32.9
AUR62020894 Chenopodium quinoa HOM05D007138 ORTHO05D009148 1.2e-36 159.8 131 58.8
Psat5g175880 Pisum sativum HOM05D007138 ORTHO05D009148 1.6e-36 159.5 247 44.5
Sed0014888 Sechium edule HOM05D007138 ORTHO05D009148 3.5e-36 158.3 332 34.9
CARHR099730 Cardamine hirsuta HOM05D007138 ORTHO05D009148 4.5e-36 157.9 390 33.6
Nitab4.5_0000037g0170 Nicotiana tabacum HOM05D007138 ORTHO05D009148 1.3e-35 156.4 132 62.1
AUR62018524 Chenopodium quinoa HOM05D007138 ORTHO05D009148 1.7e-35 156.0 436 30.0
TAR365G0398 Trochodendron aralioides HOM05D007138 ORTHO05D009148 1.7e-35 156.0 172 48.3
ECA233G0560 Erigeron canadensis HOM05D007138 ORTHO05D009148 2.9e-35 155.2 353 34.0
THA.LOC104804782 Tarenaya hassleriana HOM05D007138 ORTHO05D009148 2.9e-35 155.2 515 29.9
Aqoxy2G03906 Aquilegia oxysepala HOM05D007138 ORTHO05D009148 5.0e-35 154.5 168 47.0
BcaB06g26533 Brassica carinata HOM05D007138 ORTHO05D009148 8.6e-35 153.7 332 35.2
Carub.0003s2404 Capsella rubella HOM05D007138 ORTHO05D009148 1.1e-34 153.3 323 34.4
Nn1g08135 Nelumbo nucifera HOM05D007138 ORTHO05D009148 1.5e-34 152.9 136 60.3
Lsat_1_v5_gn_6_59601 Lactuca sativa HOM05D007138 ORTHO05D009148 1.9e-34 152.5 438 28.8
AT3G23740 Arabidopsis thaliana HOM05D007138 ORTHO05D009148 2.5e-34 152.1 322 37.6
Peaxi162Scf00286g01047 Petunia axillaris HOM05D007138 ORTHO05D009148 4.3e-34 151.4 227 44.1
Sopen09g035410 Solanum pennellii HOM05D007138 ORTHO05D009148 4.3e-34 151.4 400 35.2
CsaV3_6G009270 Cucumis sativus L. HOM05D007138 ORTHO05D009148 5.6e-34 151.0 126 61.9
AL3G38640 Arabidopsis lyrata HOM05D007138 ORTHO05D009148 1.2e-33 149.8 319 34.8
PGSC0003DMG400021869 Solanum tuberosum HOM05D007138 ORTHO05D009148 1.2e-33 149.8 259 41.3
Solyc09g092510.3 Solanum lycopersicum HOM05D007138 ORTHO05D009148 3.6e-33 148.3 396 34.3
BcaC06g35563 Brassica carinata HOM05D007138 ORTHO05D009148 2.3e-32 145.6 333 34.2
MELO3C021153.2 Cucumis melo HOM05D007138 ORTHO05D009148 4.0e-32 144.8 114 64.9
Sc13g0000510 Simmondsia chinensis HOM05D007138 ORTHO05D009148 5.2e-32 144.4 125 57.6
A07p08650 Brassica napus HOM05D007138 ORTHO05D009148 1.5e-31 142.9 332 32.8
BraA07t28655Z Brassica rapa HOM05D007138 ORTHO05D009148 1.5e-31 142.9 332 32.8
HanXRQChr02g0058451 Helianthus annuus HOM05D007138 ORTHO05D009148 1.5e-31 142.9 373 28.4
C07p13480 Brassica napus HOM05D007138 ORTHO05D009148 1.7e-30 139.4 333 33.9
BolC7t41843H Brassica oleracea HOM05D007138 ORTHO05D009148 1.7e-30 139.4 333 33.9
Aa31LG8G10280 Aethionema arabicum HOM05D007138 ORTHO05D009148 2.9e-30 138.7 130 54.6
Thhalv10002448m.g Eutrema salsugineum HOM05D007138 ORTHO05D009148 5.4e-29 134.4 139 50.4
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 7.0e-29 134.0 187 41.7
Ah.04g149560 Amaranthus hybridus HOM05D001269 ORTHO05D001083 1.0e-27 130.2 125 53.6
unitig_747.g21666 Utricularia gibba HOM05D007138 ORTHO05D009148 1.9e-26 125.9 302 32.5
Lsat_1_v5_gn_6_58941 Lactuca sativa HOM05D007138 ORTHO05D009148 5.6e-26 124.4 426 28.6
Os01g0101800 Oryza sativa ssp. japonica HOM05D007138 ORTHO05D009148 9.8e-23 113.6 129 44.2
Zm00001eb334100 Zea mays HOM05D007138 ORTHO05D009148 1.7e-22 112.8 123 43.9
Oeu056444.1 Olea europaea HOM05D007138 ORTHO05D009148 2.2e-22 112.5 333 30.6
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 1.3e-19 103.2 212 32.1
Psat1g115840 Pisum sativum HOM05D007138 ORTHO05D009148 2.3e-19 102.4 211 37.4
Zm00001eb127090 Zea mays HOM05D007138 ORTHO05D009148 1.9e-18 99.4 107 43.0
Lalb_Chr13g0294681 Lupinus albus HOM05D007138 ORTHO05D009148 2.3e-16 92.4 325 31.7
CDE09G0581 Ceratophyllum demersum HOM05D007138 ORTHO05D009148 1.5e-15 89.7 62 62.9
ATR0561G013 Amborella trichopoda HOM05D007138 ORTHO05D009148 4.6e-12 78.2 144 33.3
Nn1g02395 Nelumbo nucifera HOM05D007138 ORTHO05D009148 2.3e-11 75.9 283 28.3
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 1.2e-07 63.5 119 31.9
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 1.3e-06 60.1 120 31.7
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 1.3e-06 60.1 55 47.3


User provided reference genes

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