Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 6.1e-135 484.2 248 100.0
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 2.6e-69 266.2 248 63.7
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 9.2e-67 257.7 259 57.9
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 1.3e-57 227.3 248 59.3
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 3.8e-52 209.1 254 50.0
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 4.9e-52 208.8 257 50.6
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 1.7e-49 200.3 263 49.0
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 4.8e-47 192.2 252 47.6
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.5e-45 187.2 260 46.5
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 1.1e-43 181.0 254 48.0
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 2.5e-40 169.9 161 60.2
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 2.4e-38 163.3 257 45.5
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 4.9e-36 155.6 254 39.4
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.4e-35 154.1 264 39.4
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 1.9e-35 153.7 254 38.6
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 2.7e-34 149.8 240 44.6
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 1.8e-33 147.1 254 41.7
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 5.1e-33 145.6 231 36.8
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 8.7e-33 144.8 194 42.8
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 1.9e-32 143.7 212 41.0
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 2.5e-32 143.3 257 39.7
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 3.3e-32 142.9 197 38.1
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.3e-32 142.5 196 43.9
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.3e-32 142.5 196 43.9
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 5.6e-32 142.1 196 43.4
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.3e-31 141.0 196 43.9
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 3.7e-31 139.4 265 39.2
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 4.8e-31 139.0 233 45.1
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.4e-30 137.5 182 47.3
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 2.4e-30 136.7 200 43.5
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 2.4e-30 136.7 193 45.6
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 5.3e-30 135.6 196 44.4
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 9.0e-30 134.8 218 40.8
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 9.0e-30 134.8 198 44.4
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 9.0e-30 134.8 198 44.9
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.2e-29 134.4 201 41.3
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.2e-29 134.4 182 45.6
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 1.2e-29 134.4 234 37.6
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 2.0e-29 133.7 196 39.3
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 2.6e-29 133.3 267 37.8
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.6e-29 133.3 198 44.4
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.6e-29 133.3 198 44.4
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.6e-29 131.7 196 44.4
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 7.6e-29 131.7 234 38.5
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 7.6e-29 131.7 212 39.2
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 1.0e-28 131.3 198 43.9
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 1.0e-28 131.3 266 36.8
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 1.0e-28 131.3 199 43.7
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 2.2e-28 130.2 184 41.8
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 3.8e-28 129.4 204 40.2
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 1.9e-27 127.1 201 39.8
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 4.2e-27 125.9 211 39.3
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 4.2e-27 125.9 257 36.6
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 4.2e-27 125.9 198 43.4
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 4.2e-27 125.9 183 41.5
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 5.5e-27 125.6 270 35.9
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 5.5e-27 125.6 185 43.8
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 7.1e-27 125.2 193 42.5
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 9.3e-27 124.8 209 40.7
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 1.2e-26 124.4 226 41.2
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 1.6e-26 124.0 267 36.7
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 1.6e-26 124.0 177 40.7
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 2.7e-26 123.2 201 42.8
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 4.6e-26 122.5 250 37.2
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 3.0e-25 119.8 195 40.5
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 5.1e-25 119.0 192 40.6
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 6.7e-25 118.6 210 39.5
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 8.7e-25 118.2 209 39.7
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 1.1e-24 117.9 252 37.3
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 1.5e-24 117.5 190 43.7
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 1.9e-24 117.1 209 39.2
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 1.9e-24 117.1 191 38.7
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 3.3e-24 116.3 211 40.3
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 3.3e-24 116.3 182 44.5
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 4.3e-24 115.9 238 32.4
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 5.7e-24 115.5 191 39.3
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 1.3e-23 114.4 190 40.0
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 2.8e-23 113.2 209 41.1
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 2.8e-23 113.2 209 41.1
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 2.8e-23 113.2 209 41.1
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 6.3e-23 112.1 217 39.2
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 6.3e-23 112.1 196 41.8
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 6.3e-23 112.1 183 39.3
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 8.2e-23 111.7 211 38.9
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 3.1e-22 109.8 186 39.8
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 3.1e-22 109.8 264 34.5
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 5.3e-22 109.0 181 39.2
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 5.3e-22 109.0 260 36.5
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 6.9e-22 108.6 191 34.6
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 9.0e-22 108.2 250 36.4
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 3.4e-21 106.3 234 35.5
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 3.4e-21 106.3 254 38.6
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 1.0e-20 104.8 193 38.9
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.3e-20 104.4 247 36.0
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 1.3e-20 104.4 187 42.2
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 1.7e-20 104.0 192 40.1
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 1.7e-20 104.0 187 42.2
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 2.2e-20 103.6 196 40.3
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 2.9e-20 103.2 256 36.3
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 3.8e-20 102.8 196 39.8
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 1.1e-19 101.3 182 40.7
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 1.9e-19 100.5 186 41.9
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 2.5e-19 100.1 183 40.4
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 2.5e-19 100.1 205 40.0
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 4.2e-19 99.4 197 39.1
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 5.5e-19 99.0 229 36.2
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 7.2e-19 98.6 197 39.1
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 9.4e-19 98.2 186 34.9
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 2.1e-18 97.1 230 34.8
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 4.6e-18 95.9 216 38.0
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 3.9e-17 92.8 223 35.4
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 8.8e-17 91.7 226 35.8
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.5e-16 90.9 246 30.9
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.0e-16 90.5 185 38.4
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 2.5e-16 90.1 196 39.3
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 4.3e-16 89.4 209 36.8
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 9.7e-16 88.2 161 40.4
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 9.7e-16 88.2 184 38.6
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 9.7e-16 88.2 184 38.6
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 9.7e-16 88.2 185 36.8
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.3e-15 87.8 194 38.1
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 1.7e-15 87.4 163 38.7
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 2.8e-15 86.7 181 38.1
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 3.7e-15 86.3 108 39.8
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 8.2e-15 85.1 240 32.9
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 1.1e-14 84.7 196 37.8
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 4.1e-14 82.8 168 39.3
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.2e-13 81.3 229 32.8
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 1.2e-13 81.3 180 35.6
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 1.5e-13 80.9 209 35.9
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.5e-13 80.9 100 35.0
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 5.9e-13 79.0 182 37.9
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 1.0e-12 78.2 158 39.2
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.3e-12 77.8 194 35.6
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 2.9e-12 76.6 183 33.9
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.8e-12 76.3 201 36.3
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.1e-11 74.7 172 41.3
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 3.2e-11 73.2 147 36.7
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 9.4e-11 71.6 185 30.8
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.2e-10 71.2 177 36.2
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 2.1e-10 70.5 154 37.7
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 7.9e-10 68.6 104 51.0
Medtr1g030870 Medicago truncatula HOM05D004353 ORTHO05D004989 1.4e-09 67.8 80 55.0
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 1.5e-08 64.3 120 36.7
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 2.0e-08 63.9 83 38.6
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.6e-08 63.5 140 37.1
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 5.7e-08 62.4 188 32.4
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.1e-06 58.2 68 44.1
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 1.8e-06 57.4 109 34.9
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 2.4e-06 57.0 176 34.7
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 4.1e-06 56.2 72 41.7
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 9.1e-06 55.1 79 40.5
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 9.1e-06 55.1 79 40.5


User provided reference genes

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