Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17983_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 4.4e-39 164.1 79 100.0
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 1.2e-28 129.4 77 81.8
Medtr4g095330 Medicago truncatula HOM05D005680 ORTHO05D006334 3.9e-27 124.4 75 80.0
Medtr8g081540 Medicago truncatula HOM05D005680 ORTHO05D006334 3.9e-27 124.4 74 85.1
TPR.G23854 Trifolium pratense HOM05D005680 ORTHO05D006334 1.5e-26 122.5 77 74.0
Lalb_Chr05g0226041 Lupinus albus HOM05D005680 ORTHO05D006334 5.6e-26 120.6 77 75.3
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 3.6e-25 117.9 75 80.0
Psat7g075160 Pisum sativum HOM05D005680 ORTHO05D006334 4.7e-25 117.5 76 75.0
Glyma.17G164200 Glycine max HOM05D005680 ORTHO05D006334 2.4e-24 115.2 74 77.0
Lj4g0022522 Lotus japonicus HOM05D005680 ORTHO05D006334 3.1e-24 114.8 82 72.0
Glyma.05G103100 Glycine max HOM05D005680 ORTHO05D006334 9.9e-23 109.8 79 70.9
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 4.9e-22 107.5 78 71.8
TPR.G11882 Trifolium pratense HOM05D005680 ORTHO05D006334 3.2e-21 104.8 71 69.0
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 4.2e-21 104.4 77 66.2
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 2.1e-20 102.1 78 65.4
Duzib147G0030 Durio zibethinus HOM05D005680 ORTHO05D006334 3.5e-20 101.3 78 64.1
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 4.6e-20 100.9 72 69.4
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 1.0e-19 99.8 73 67.1
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 1.7e-19 99.0 69 68.1
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 1.7e-19 99.0 75 64.0
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 1.7e-19 99.0 75 64.0
Ciclev10026786m.g Citrus clementina HOM05D005680 ORTHO05D006334 2.3e-19 98.6 75 66.7
MD02G1181800 Malus domestica HOM05D005680 ORTHO05D006334 1.5e-18 95.9 70 62.9
Prupe.6G224700 Prunus persica HOM05D005680 ORTHO05D006334 1.5e-18 95.9 75 64.0
Thecc.01G068000 Theobroma cacao HOM05D005680 ORTHO05D006334 4.3e-18 94.4 78 60.3
Gohir.A11G217600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 5.6e-18 94.0 75 61.3
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 9.6e-18 93.2 70 60.0
Oeu013277.1 Olea europaea HOM05D005680 ORTHO05D006334 9.6e-18 93.2 76 64.5
PGSC0003DMG400024942 Solanum tuberosum HOM05D005680 ORTHO05D006334 1.6e-17 92.4 83 61.4
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 2.1e-17 92.0 70 60.0
Sopen02g037260 Solanum pennellii HOM05D005680 ORTHO05D006334 2.8e-17 91.7 83 60.2
Manes.12G112300 Manihot esculenta HOM05D005680 ORTHO05D006334 3.6e-17 91.3 73 58.9
CAN.G1075.10 Capsicum annuum HOM05D005680 ORTHO05D006334 1.1e-16 89.7 83 59.0
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 1.8e-16 89.0 77 54.5
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 2.4e-16 88.6 79 57.0
COL.COLO4_11529 Corchorus olitorius HOM05D005680 ORTHO05D006334 4.0e-16 87.8 67 64.2
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 4.0e-16 87.8 78 52.6
Atru.chr13.75 Acer truncatum HOM05D005680 ORTHO05D006334 6.9e-16 87.0 72 59.7
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 2.0e-15 85.5 71 63.4
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 3.4e-15 84.7 67 61.2
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 3.4e-15 84.7 78 55.1
FAN19G0782 Fragaria x ananassa HOM05D005680 ORTHO05D006334 4.5e-15 84.3 75 60.0
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 2.2e-14 82.0 73 57.5
Rhsim10G0104100 Rhododendron simsii HOM05D003166 ORTHO05D003605 2.2e-14 82.0 62 62.9
FvH4_1g17140 Fragaria vesca HOM05D005680 ORTHO05D006334 2.9e-14 81.6 75 58.7
Sabra02G0004200 Salix brachista HOM05D005680 ORTHO05D006334 3.8e-14 81.3 77 53.2
FAN02G2432 Fragaria x ananassa HOM05D005680 ORTHO05D006334 6.4e-14 80.5 63 63.5
FAN26G2100 Fragaria x ananassa HOM05D005680 ORTHO05D006334 6.4e-14 80.5 63 63.5
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 8.4e-14 80.1 77 51.9
CANSAT01G2162 Cannabis sativa HOM05D005680 ORTHO05D006334 1.9e-13 79.0 78 53.8
Sabra05G0114900 Salix brachista HOM05D005680 ORTHO05D006334 1.9e-13 79.0 55 63.6
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 1.9e-13 79.0 60 60.0
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 3.2e-13 78.2 69 49.3
ClCG01G017300 Citrullus lanatus HOM05D005680 ORTHO05D006334 3.2e-13 78.2 79 54.4
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 4.2e-13 77.8 55 61.8
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 4.2e-13 77.8 55 61.8
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 4.2e-13 77.8 80 55.0
FAN23G0577 Fragaria x ananassa HOM05D005680 ORTHO05D006334 4.2e-13 77.8 65 60.0
FAN28G2165 Fragaria x ananassa HOM05D005680 ORTHO05D006334 4.2e-13 77.8 65 60.0
Sabra05G0116000 Salix brachista HOM05D005680 ORTHO05D006334 7.1e-13 77.0 55 63.6
MD15G1292700 Malus domestica HOM05D005680 ORTHO05D006334 9.3e-13 76.6 59 64.4
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 1.6e-12 75.9 49 71.4
SalBow5G4637 Salvia bowleyana HOM05D005680 ORTHO05D006334 1.6e-12 75.9 75 52.0
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 2.1e-12 75.5 71 53.5
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 2.7e-12 75.1 71 53.5
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 4.6e-12 74.3 61 57.4
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 7.9e-12 73.6 68 61.8
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 1.0e-11 73.2 64 64.1
ECA246G0256 Erigeron canadensis HOM05D005680 ORTHO05D006334 1.3e-11 72.8 62 59.7
HanXRQChr12g0377211 Helianthus annuus HOM05D005680 ORTHO05D006334 1.3e-11 72.8 86 51.2
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 1.8e-11 72.4 61 59.0
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 2.3e-11 72.0 67 53.7
Nitab4.5_0003878g0080 Nicotiana tabacum HOM05D005680 ORTHO05D006334 2.3e-11 72.0 56 62.5
Nitab4.5_0007941g0020 Nicotiana tabacum HOM05D005680 ORTHO05D006334 2.3e-11 72.0 56 62.5
Nn1g04362 Nelumbo nucifera HOM05D005680 ORTHO05D006334 3.0e-11 71.6 52 61.5
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 3.9e-11 71.2 51 66.7
THA.LOC104819870 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 5.1e-11 70.9 63 52.4
QL02p015306 Quercus lobata HOM05D005680 ORTHO05D006334 8.7e-11 70.1 74 50.0
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 1.5e-10 69.3 67 52.2
Nitab4.5_0000419g0130 Nicotiana tabacum HOM05D005680 ORTHO05D006334 1.5e-10 69.3 78 52.6
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 1.9e-10 68.9 67 52.2
Duzib052G1168 Durio zibethinus HOM05D005680 ORTHO05D006334 1.9e-10 68.9 56 60.7
Sed0000508 Sechium edule HOM05D005680 ORTHO05D006334 1.9e-10 68.9 78 50.0
COL.COLO4_17729 Corchorus olitorius HOM05D005680 ORTHO05D006334 3.3e-10 68.2 57 61.4
SalBow1G8512 Salvia bowleyana HOM05D005680 ORTHO05D006334 3.3e-10 68.2 71 49.3
AL4G29360 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 4.3e-10 67.8 66 53.0
CsaV3_6G043830 Cucumis sativus L. HOM05D005680 ORTHO05D006334 7.4e-10 67.0 57 59.6
HPP92_012496 Vanilla planifolia HOM05D005680 ORTHO05D006334 9.6e-10 66.6 68 54.4
DCAR_003112 Daucus carota HOM05D005680 ORTHO05D006334 1.3e-09 66.2 62 58.1
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 1.3e-09 66.2 55 52.7
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 1.6e-09 65.9 64 53.1
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 1.6e-09 65.9 64 53.1
A04p25910 Brassica napus HOM05D005680 ORTHO05D006334 1.6e-09 65.9 64 53.1
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 1.6e-09 65.9 64 53.1
BraA04t18094Z Brassica rapa HOM05D005680 ORTHO05D006334 1.6e-09 65.9 64 53.1
CARHR127690 Cardamine hirsuta HOM05D005680 ORTHO05D006334 1.6e-09 65.9 66 50.0
BcaB01g03924 Brassica carinata HOM05D005680 ORTHO05D006334 2.1e-09 65.5 64 53.1
SHI12592 Sapria himalayana HOM05D005680 ORTHO05D006334 2.1e-09 65.5 75 41.3
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 2.1e-09 65.5 48 64.6
BcaC02g07811 Brassica carinata HOM05D005680 ORTHO05D006334 2.8e-09 65.1 64 51.6
C04p63190 Brassica napus HOM05D005680 ORTHO05D006334 2.8e-09 65.1 64 51.6
Carub.0004s1530 Capsella rubella HOM05D005680 ORTHO05D006334 2.8e-09 65.1 51 58.8
Thecc.02G019100 Theobroma cacao HOM05D005680 ORTHO05D006334 2.8e-09 65.1 57 57.9
MELO3C017050.2 Cucumis melo HOM05D005680 ORTHO05D006334 3.7e-09 64.7 66 50.0
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 3.7e-09 64.7 55 54.5
Cpa.g.sc88.61 Carica papaya HOM05D005680 ORTHO05D006334 8.1e-09 63.5 59 54.2
CsaV3_4G037560 Cucumis sativus L. HOM05D005680 ORTHO05D006334 8.1e-09 63.5 66 50.0
ATR0605G143 Amborella trichopoda HOM05D005680 ORTHO05D006334 1.4e-08 62.8 76 48.7
ClCG11G018960 Citrullus lanatus HOM05D005680 ORTHO05D006334 1.4e-08 62.8 77 44.2
Lalb_Chr23g0265551 Lupinus albus HOM05D005680 ORTHO05D006334 1.8e-08 62.4 52 59.6
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 2.4e-08 62.0 72 44.4
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 3.1e-08 61.6 64 51.6
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 4.0e-08 61.2 62 48.4
CDE04G1110 Ceratophyllum demersum HOM05D005680 ORTHO05D006334 4.0e-08 61.2 64 50.0
Gorai.012G169600 Gossypium raimondii HOM05D005680 ORTHO05D006334 1.2e-07 59.7 52 51.9
COL.COLO4_09626 Corchorus olitorius HOM05D005680 ORTHO05D006334 1.5e-07 59.3 61 50.8
Gohir.A04G133600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 1.5e-07 59.3 52 51.9
Gohir.D04G176700 Gossypium hirsutum HOM05D005680 ORTHO05D006334 1.5e-07 59.3 52 51.9
Cpa.g.sc6.54 Carica papaya HOM05D005680 ORTHO05D006334 2.0e-07 58.9 46 63.0
Dinv38141 Davidia involucrata HOM05D000032 ORTHO05D004656 4.5e-07 57.8 72 43.1
Lsat_1_v5_gn_3_87720 Lactuca sativa HOM05D005680 ORTHO05D006334 4.5e-07 57.8 32 75.0
CARHR114390 Cardamine hirsuta HOM05D013772 ORTHO05D006334 7.6e-07 57.0 42 59.5
ATR0030G059 Amborella trichopoda HOM05D005680 ORTHO05D006334 9.9e-07 56.6 50 60.0
Thhalv10000392m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 2.9e-06 55.1 67 41.8
Sp4g02150 Schrenkiella parvula HOM05D005680 ORTHO05D006334 8.4e-06 53.5 67 41.8


User provided reference genes

Program Settings