Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 4.7e-175 617.8 330 100.0
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 5.8e-149 531.2 316 90.8
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 3.2e-147 525.4 316 89.9
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 5.0e-145 518.1 316 88.9
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.0e-137 493.8 315 84.1
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 3.9e-137 491.9 312 84.6
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 9.5e-136 487.3 320 84.1
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 2.5e-128 462.6 317 80.1
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.8e-126 456.4 319 78.1
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 6.8e-126 454.5 316 78.8
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 4.9e-124 448.4 346 73.7
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 3.0e-105 386.0 328 64.9
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.5e-104 383.6 323 66.6
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 3.3e-104 382.5 311 66.9
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 4.3e-104 382.1 314 67.5
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.7e-103 379.0 316 65.5
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 3.7e-103 379.0 300 69.0
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.1e-102 377.5 320 64.7
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.8e-102 376.7 314 66.2
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.9e-102 374.8 323 64.4
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 4.9e-100 368.6 329 62.9
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.9e-99 366.7 257 78.6
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 3.2e-99 365.9 316 63.6
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.5e-99 365.2 311 65.0
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 1.2e-98 364.0 303 65.0
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 2.1e-98 363.2 317 62.8
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 7.9e-98 361.3 316 63.6
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 1.0e-97 360.9 300 65.7
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 1.0e-97 360.9 306 65.0
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.8e-97 360.1 314 63.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 3.0e-97 359.4 298 65.8
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.0e-97 359.4 298 65.8
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.0e-97 359.4 323 62.8
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 3.9e-97 359.0 316 62.7
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 9.6e-96 354.4 298 63.4
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 9.6e-96 354.4 318 61.6
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.3e-95 354.0 296 63.9
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 2.1e-95 353.2 305 63.6
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 2.1e-95 353.2 332 59.3
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 2.1e-95 353.2 316 63.3
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 4.8e-95 352.1 320 63.8
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 4.8e-95 352.1 303 66.3
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 8.2e-95 351.3 304 63.5
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 1.4e-94 350.5 314 62.7
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 2.4e-94 349.7 314 64.3
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.1e-94 349.4 304 63.5
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.9e-94 348.2 340 59.1
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 6.9e-94 348.2 316 61.1
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.2e-93 347.4 314 61.8
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 5.8e-93 345.1 329 59.3
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.0e-92 344.4 320 62.2
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.0e-92 344.4 339 58.4
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 2.9e-92 342.8 304 63.5
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 8.4e-92 341.3 329 59.0
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 8.4e-92 341.3 318 60.7
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.1e-91 340.9 300 61.0
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.1e-91 340.9 305 62.6
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 3.2e-91 339.3 316 59.8
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 9.3e-91 337.8 315 59.7
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 9.3e-91 337.8 315 59.7
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 2.3e-89 333.2 317 59.3
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.0e-89 332.8 323 58.8
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 2.5e-88 329.7 302 60.9
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 4.3e-88 328.9 321 56.7
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 5.7e-88 328.6 328 57.6
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 9.7e-88 327.8 303 60.4
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 9.7e-88 327.8 315 58.7
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.3e-87 327.4 298 61.1
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.6e-87 327.0 303 60.4
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 3.7e-87 325.9 297 58.9
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.1e-86 324.3 328 57.9
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.4e-86 323.2 313 56.5
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 3.1e-86 322.8 303 60.7
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.1e-86 322.8 303 60.7
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 5.3e-86 322.0 318 56.3
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 2.0e-85 320.1 311 57.9
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 5.9e-85 318.5 301 60.5
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 5.9e-85 318.5 316 56.6
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.3e-84 317.4 316 57.6
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 1.3e-84 317.4 304 57.6
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.2e-84 316.6 390 50.0
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.9e-84 316.2 301 59.8
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.8e-84 315.8 344 53.5
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 5.0e-84 315.5 301 60.1
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 6.5e-84 315.1 314 57.0
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.9e-83 313.5 298 57.4
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.5e-83 313.2 313 57.5
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.2e-83 312.8 408 47.8
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 4.2e-83 312.4 299 59.9
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.7e-82 309.7 306 55.2
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 7.9e-82 308.1 324 55.9
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 6.7e-81 305.1 302 55.6
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 2.5e-80 303.1 266 61.7
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 9.7e-80 301.2 323 54.5
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 9.7e-80 301.2 324 53.4
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.2e-79 300.1 321 52.6
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 2.4e-78 296.6 307 56.7
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 4.1e-78 295.8 313 53.7
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 5.3e-78 295.4 300 54.3
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 4.5e-77 292.4 541 39.6
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 5.9e-77 292.0 338 52.4
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 2.9e-76 289.7 261 63.2
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 5.5e-75 285.4 418 44.5
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 3.6e-74 282.7 312 54.5
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 2.3e-73 280.0 315 51.1
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 2.3e-73 280.0 307 55.4
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 3.9e-73 279.3 242 63.2
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 2.6e-72 276.6 295 55.6
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 6.3e-71 271.9 359 49.0
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.0e-69 266.9 301 51.8
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 2.6e-69 266.5 257 58.8
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 4.5e-69 265.8 297 51.9
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 5.9e-69 265.4 245 60.4
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 6.5e-68 261.9 235 63.0
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 1.1e-67 261.2 258 58.1
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.1e-64 251.1 320 47.2
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.7e-64 248.1 188 70.2
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 4.1e-62 242.7 233 57.1
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 5.9e-61 238.8 258 55.0
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 5.5e-59 232.3 307 45.3
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.3e-52 211.1 214 57.0
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.1e-50 202.2 316 42.4
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.0e-49 199.9 311 41.5
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 4.0e-49 199.5 140 79.3
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 2.0e-45 187.2 125 80.0
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.1e-43 181.4 158 58.9
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 4.2e-43 179.5 171 58.5
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 8.0e-42 175.3 308 37.3
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 9.2e-38 161.8 296 40.2
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 9.2e-38 161.8 121 71.1
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 2.7e-37 160.2 292 37.7
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 2.3e-36 157.1 328 34.1
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.5e-35 154.5 298 35.6
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.9e-35 154.1 190 51.1
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 1.6e-34 151.0 119 63.9
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 3.1e-33 146.7 176 48.9
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.7e-28 131.0 104 66.3
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 2.5e-27 127.1 103 68.0
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.0e-25 119.8 111 62.2
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 1.2e-24 118.2 234 38.0
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 7.5e-24 115.5 129 50.4
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 9.8e-24 115.2 198 40.4
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 2.7e-21 107.1 106 54.7
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 6.0e-21 105.9 89 67.4
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 6.0e-21 105.9 89 67.4
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.3e-17 94.0 76 68.4
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.0e-17 93.2 124 39.5
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 6.8e-17 92.4 86 57.0
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-16 90.5 134 41.0
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 1.8e-09 67.8 43 79.1
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.8e-09 67.8 224 26.8
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 2.0e-08 64.3 85 49.4
Lalb_Chr21g0313031 Lupinus albus HOM05D004482 ORTHO05D005212 6.4e-07 59.3 50 54.0
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.9e-06 57.8 273 24.5
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 2.4e-06 57.4 84 41.7
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 4.2e-06 56.6 84 42.9
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 4.2e-06 56.6 72 43.1
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 7.1e-06 55.8 72 43.1


User provided reference genes

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