Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.5e-96 355.5 187 100.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.9e-94 348.2 187 98.4
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 4.2e-88 328.2 187 91.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 8.7e-86 320.5 187 88.8
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.6e-84 316.2 193 88.1
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.1e-83 313.5 193 86.5
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.1e-83 313.5 187 89.8
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 2.4e-83 312.4 187 86.6
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 4.1e-83 311.6 187 86.6
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.0e-82 309.3 193 86.5
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 2.0e-82 309.3 185 88.6
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 8.8e-78 293.9 187 85.6
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.0e-77 292.7 163 93.3
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 2.8e-76 288.9 195 80.0
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.4e-72 276.6 189 77.8
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.1e-71 272.7 190 76.3
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 2.7e-71 272.3 190 75.8
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 3.6e-71 271.9 187 78.1
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.7e-71 271.6 190 75.8
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 6.1e-71 271.2 190 75.8
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.3e-70 269.2 178 77.5
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 3.0e-70 268.9 192 74.5
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 3.0e-70 268.9 190 76.3
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.9e-70 268.5 187 77.0
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 5.1e-70 268.1 190 74.2
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 8.8e-70 267.3 187 76.5
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.0e-69 266.2 191 76.4
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.3e-69 265.4 190 74.2
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 3.3e-69 265.4 188 73.9
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 3.3e-69 265.4 193 73.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 4.4e-69 265.0 186 75.8
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 4.4e-69 265.0 176 76.7
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 4.4e-69 265.0 190 74.2
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 5.7e-69 264.6 190 73.2
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.7e-69 264.6 190 73.2
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 7.4e-69 264.2 186 75.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 7.4e-69 264.2 189 74.1
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 9.7e-69 263.8 190 74.7
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.3e-68 263.5 190 75.3
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 2.2e-68 262.7 176 77.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 3.7e-68 261.9 176 76.1
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.7e-68 261.9 190 71.6
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 3.7e-68 261.9 190 72.1
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 8.2e-68 260.8 190 73.2
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 8.2e-68 260.8 190 72.6
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.4e-67 259.2 190 72.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 5.3e-67 258.1 193 75.6
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 5.3e-67 258.1 174 77.0
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.0e-67 257.7 188 72.9
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.2e-66 256.9 195 69.7
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.5e-66 256.5 193 75.1
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.5e-66 256.5 179 74.9
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 3.5e-66 255.4 189 71.4
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 5.9e-66 254.6 195 69.7
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 5.9e-66 254.6 192 70.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 2.2e-65 252.7 190 72.6
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 2.9e-65 252.3 189 71.4
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 2.9e-65 252.3 169 80.5
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.9e-65 252.3 195 69.2
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.9e-65 252.3 192 71.4
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.8e-65 251.9 188 67.6
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 3.8e-65 251.9 190 68.9
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 5.0e-65 251.5 155 81.3
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 6.5e-65 251.1 189 69.3
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 6.5e-65 251.1 190 71.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.1e-64 250.4 189 71.4
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 3.2e-64 248.8 193 70.5
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 3.2e-64 248.8 192 68.8
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 3.2e-64 248.8 192 68.8
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 4.2e-64 248.4 189 70.4
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.5e-64 248.1 187 70.1
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 5.5e-64 248.1 200 68.0
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 5.5e-64 248.1 200 68.0
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 9.4e-64 247.3 156 78.8
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 9.4e-64 247.3 190 71.1
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.2e-63 246.9 172 74.4
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.6e-63 246.5 187 69.5
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.1e-63 246.1 200 67.5
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.7e-63 245.7 190 66.8
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.6e-63 245.4 187 69.0
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 3.6e-63 245.4 183 68.9
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.0e-62 243.8 191 67.5
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.8e-62 243.0 192 66.7
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.8e-62 243.0 191 67.0
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.3e-62 242.7 190 67.4
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 3.0e-62 242.3 191 67.0
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 4.0e-62 241.9 190 69.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 4.0e-62 241.9 190 69.5
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 5.2e-62 241.5 179 70.9
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 8.8e-62 240.7 174 74.1
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-61 240.4 193 66.3
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.5e-61 240.0 192 64.1
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.4e-61 238.4 168 74.4
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 5.7e-61 238.0 186 68.3
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 7.5e-61 237.7 192 64.6
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.3e-60 236.9 178 68.0
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.3e-60 236.9 162 71.6
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.7e-60 236.5 176 69.3
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 2.2e-60 236.1 184 65.8
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 3.7e-60 235.3 168 70.2
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 4.8e-60 235.0 207 62.3
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 4.8e-60 235.0 164 77.4
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 6.3e-60 234.6 151 77.5
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 8.2e-60 234.2 169 73.4
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 8.2e-60 234.2 182 68.1
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.4e-59 233.4 185 65.9
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.4e-59 233.4 187 67.9
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.4e-59 232.6 187 65.2
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 9.1e-59 230.7 200 64.5
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.6e-58 229.9 187 64.7
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 5.9e-58 228.0 192 61.5
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.3e-57 226.9 206 61.2
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.3e-57 226.9 185 64.3
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 2.2e-57 226.1 196 62.8
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 5.0e-57 224.9 157 70.1
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 5.0e-57 224.9 156 73.1
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 4.2e-56 221.9 192 66.7
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 5.5e-56 221.5 188 62.8
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.6e-55 219.9 186 64.5
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.6e-55 219.9 158 72.8
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 4.7e-55 218.4 186 63.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 8.0e-55 217.6 195 60.5
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.8e-54 216.5 165 68.5
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 4.0e-54 215.3 165 68.5
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 5.7e-53 211.5 169 66.3
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.2e-52 209.5 196 62.2
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 3.5e-50 202.2 255 49.4
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 7.7e-50 201.1 183 61.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.2e-48 195.7 176 56.8
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 2.3e-46 189.5 158 62.0
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.1e-43 178.7 136 72.1
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 3.5e-42 175.6 148 61.5
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.3e-41 172.9 232 48.7
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.2e-39 167.2 108 71.3
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.8e-39 166.0 173 54.3
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 6.1e-39 164.9 132 64.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.4e-38 163.7 106 75.5
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 2.0e-37 159.8 157 49.0
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 9.8e-37 157.5 185 50.3
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 8.3e-36 154.5 143 58.0
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.9e-34 148.3 126 61.1
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.8e-34 147.9 130 59.2
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-33 147.5 128 60.2
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.7e-33 146.7 130 59.2
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 2.3e-33 146.4 146 46.6
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.6e-33 144.4 130 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.6e-31 139.0 151 45.0
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 6.2e-31 138.3 158 45.6
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 4.0e-30 135.6 91 67.0
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 5.2e-30 135.2 82 78.0
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.5e-29 133.7 146 44.5
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.5e-29 133.7 136 50.7
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.6e-29 132.9 106 62.3
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 8.1e-23 111.3 120 55.0
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 8.9e-22 107.8 172 40.7
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.0e-17 94.4 86 61.6
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.3e-14 83.2 57 68.4
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.7e-09 67.0 80 56.2
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 1.5e-08 63.9 172 36.6
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.2e-07 60.8 106 41.5
Medtr1g041545 Medicago truncatula HOM05D004525 ORTHO05D259400 8.9e-06 54.7 60 53.3


User provided reference genes

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