Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.0e-161 573.9 429 100.0
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.7e-116 423.7 429 80.9
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.2e-109 401.0 385 86.0
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.0e-105 387.9 431 81.7
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 6.9e-102 375.2 387 80.4
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 4.2e-99 365.9 418 75.1
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 4.2e-99 365.9 387 77.0
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.2e-98 364.4 387 79.8
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.2e-98 364.4 386 78.2
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 6.2e-95 352.1 386 78.2
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 6.9e-94 348.6 434 71.0
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 1.5e-93 347.4 413 75.8
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 7.6e-93 345.1 384 75.3
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.9e-92 342.4 432 70.1
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 6.4e-92 342.0 384 77.3
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.2e-90 337.8 425 69.4
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.8e-89 334.0 370 76.2
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 3.9e-89 332.8 329 83.6
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 8.7e-89 331.6 384 72.9
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 1.5e-88 330.9 421 71.3
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 6.2e-87 325.5 439 68.1
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 8.1e-87 325.1 384 74.5
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 5.3e-86 322.4 383 73.9
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 6.9e-86 322.0 387 73.6
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.4e-85 319.7 383 71.0
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 4.5e-85 319.3 387 72.1
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 5.8e-85 318.9 383 74.9
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.7e-84 317.4 387 71.6
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.9e-84 316.6 406 69.2
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.9e-84 316.6 384 71.4
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 8.4e-84 315.1 384 72.4
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 7.1e-83 312.0 381 71.7
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 9.3e-83 311.6 381 71.7
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.2e-82 311.2 385 73.5
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 2.1e-82 310.5 380 71.3
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.1e-82 310.5 380 71.3
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.5e-82 309.7 381 71.4
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 2.3e-81 307.0 380 70.5
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 5.1e-81 305.8 382 68.8
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 8.7e-81 305.1 382 69.4
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.5e-80 303.5 410 67.1
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.3e-80 303.1 385 70.9
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.6e-79 300.8 382 70.4
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.2e-79 298.9 383 69.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-78 298.1 431 68.2
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-78 298.1 389 69.7
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.1e-78 298.1 387 67.2
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.4e-78 297.7 384 70.3
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.1e-78 296.6 432 65.5
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 9.0e-78 295.0 383 72.1
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-77 294.7 432 65.5
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.0e-77 293.9 432 65.5
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 2.6e-77 293.5 381 72.2
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.8e-77 292.4 381 72.2
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.7e-76 290.8 387 67.2
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.9e-76 290.0 381 71.7
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 3.8e-76 289.7 387 69.3
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 3.8e-76 289.7 386 66.6
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 5.0e-76 289.3 414 64.5
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 5.0e-76 289.3 387 68.7
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 8.4e-76 288.5 349 73.9
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 8.4e-76 288.5 385 73.2
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.1e-75 288.1 386 68.4
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 1.4e-75 287.7 389 67.1
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.4e-75 287.7 382 71.5
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.4e-75 287.7 386 67.1
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.2e-75 286.6 388 69.3
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 4.2e-75 286.2 359 73.5
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 9.3e-75 285.0 387 66.9
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-74 284.6 356 72.8
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 4.6e-74 282.7 388 65.5
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.3e-73 281.2 389 68.4
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.3e-73 281.2 386 69.2
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.9e-72 277.3 386 67.1
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.5e-72 276.9 387 69.3
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.5e-72 276.9 387 67.2
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 7.4e-72 275.4 382 69.9
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 7.4e-72 275.4 384 69.3
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.2e-71 273.9 369 69.6
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 2.8e-71 273.5 385 67.3
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 6.3e-71 272.3 322 72.7
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.4e-70 271.2 382 70.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 4.1e-70 269.6 430 62.3
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.0e-69 267.3 394 66.5
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.9e-69 265.8 384 65.6
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 7.7e-69 265.4 320 72.8
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.7e-68 264.2 390 66.4
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 2.2e-68 263.8 408 65.7
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 5.0e-68 262.7 423 62.2
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.9e-67 260.8 353 69.7
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 3.2e-67 260.0 390 62.3
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.2e-66 258.1 385 63.6
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.6e-66 256.1 388 63.4
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 8.8e-65 251.9 385 62.9
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 3.7e-63 246.5 188 66.0
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 4.8e-63 246.1 404 66.8
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 6.3e-63 245.7 393 65.1
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.4e-62 244.6 390 64.9
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 3.1e-62 243.4 405 62.0
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 6.9e-62 242.3 369 64.0
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.2e-61 241.5 386 63.2
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.5e-61 241.1 386 63.0
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.6e-61 240.4 396 63.1
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 1.0e-60 238.4 385 63.4
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.7e-60 237.7 384 63.0
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 6.5e-60 235.7 395 62.5
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 8.5e-60 235.3 394 60.4
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.1e-59 235.0 395 62.3
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-59 235.0 439 61.3
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 1.1e-59 235.0 439 61.3
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 1.1e-59 235.0 439 61.3
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.9e-59 234.2 396 63.4
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.9e-59 234.2 391 60.4
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.1e-58 230.7 439 62.4
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 2.3e-57 227.3 285 81.8
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.9e-57 226.5 373 64.9
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.1e-56 224.9 395 59.7
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 3.3e-56 223.4 390 62.6
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 5.7e-56 222.6 390 63.8
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.2e-55 220.7 389 60.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 2.4e-54 217.2 379 60.2
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 4.5e-53 213.0 393 62.8
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 3.8e-52 209.9 387 64.1
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.8e-52 209.9 372 43.5
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 6.5e-52 209.1 331 69.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.5e-51 207.2 393 62.3
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 2.5e-51 207.2 393 62.3
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 8.0e-50 202.2 329 62.9
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 4.4e-48 196.4 384 62.2
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 7.4e-48 195.7 428 54.9
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 3.7e-47 193.4 387 62.0
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-45 188.3 388 62.1
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.2e-45 188.3 388 62.1
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.6e-45 187.2 388 61.9
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.6e-45 187.2 379 62.5
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-42 178.3 386 59.1
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.4e-41 174.9 401 58.9
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.4e-41 174.9 341 55.7
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 6.8e-41 172.6 272 68.4
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.6e-40 170.6 393 53.4
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.7e-39 167.9 373 60.1
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 8.3e-39 165.6 387 38.0
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.8e-38 164.5 330 64.2
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 5.4e-38 162.9 402 58.2
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 7.0e-38 162.5 197 49.7
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 2.0e-37 161.0 192 49.0
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.7e-37 159.1 404 56.7
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 7.7e-37 159.1 169 50.9
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.3e-33 147.5 124 61.3
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 9.8e-32 142.1 433 49.0
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 4.5e-29 133.3 411 43.6
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 5.9e-29 132.9 262 68.3
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 7.7e-29 132.5 278 65.8
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 5.0e-28 129.8 205 41.0
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 9.5e-27 125.6 405 50.4
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.6e-26 124.8 110 68.2
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 6.1e-26 122.9 136 53.7
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 6.8e-25 119.4 247 74.1
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.0e-17 95.5 94 55.3
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 7.5e-16 89.4 250 57.6
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.3e-15 88.6 93 52.7
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 4.9e-15 86.7 193 30.1
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.1e-14 85.5 102 48.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 2.7e-13 80.9 159 41.5
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 1.2e-10 72.0 53 62.3
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.6e-10 71.6 98 45.9
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.1e-09 67.4 53 58.5
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 2.9e-07 60.8 50 58.0
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 3.7e-07 60.5 50 56.0
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.2e-06 57.4 46 60.9
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.2e-06 57.4 46 60.9
Medtr3g031520 Medicago truncatula HOM05D000071 ORTHO05D000029 5.4e-06 56.6 111 37.8


User provided reference genes

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