Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 2.8e-45 184.9 90 100.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 3.7e-34 147.9 88 83.0
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 9.2e-33 143.3 85 82.4
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 9.5e-30 133.3 87 74.7
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.2e-26 122.1 83 71.1
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.1e-25 119.8 99 64.6
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 5.4e-25 117.5 100 65.0
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.4e-25 117.5 84 63.1
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 7.1e-25 117.1 84 63.1
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.2e-25 116.7 84 63.1
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.1e-24 115.5 100 64.0
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 4.6e-24 114.4 86 64.0
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.1e-22 109.8 87 63.2
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.9e-22 109.0 87 62.1
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.3e-22 107.8 80 62.5
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 7.3e-22 107.1 87 60.9
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.6e-21 105.9 87 58.6
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.1e-20 103.2 87 58.6
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 5.2e-20 100.9 83 57.8
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 6.8e-20 100.5 77 61.0
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 2.6e-19 98.6 81 55.6
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.6e-19 98.6 83 54.2
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 4.4e-19 97.8 75 57.3
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.8e-19 97.4 64 67.2
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 9.9e-19 96.7 76 60.5
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.7e-18 95.9 74 62.2
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.7e-18 95.9 83 53.0
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.7e-18 95.9 78 61.5
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.9e-18 95.1 72 62.5
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 4.9e-18 94.4 67 67.2
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.9e-18 94.4 61 72.1
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 6.4e-18 94.0 70 61.4
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.1e-17 93.2 76 56.6
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.1e-17 93.2 83 56.6
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.4e-17 92.8 92 48.9
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.9e-17 92.4 89 51.7
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.4e-17 92.0 85 52.9
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.2e-17 91.7 80 53.8
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 5.4e-17 90.9 88 51.1
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.6e-16 89.4 84 56.0
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.6e-16 89.4 84 56.0
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.6e-16 89.4 76 57.9
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.1e-16 89.0 67 62.7
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 2.1e-16 89.0 73 56.2
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 2.7e-16 88.6 77 50.6
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 3.5e-16 88.2 61 70.5
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 3.5e-16 88.2 61 70.5
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 3.5e-16 88.2 75 53.3
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.6e-16 87.8 75 52.0
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 4.6e-16 87.8 86 54.7
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 4.6e-16 87.8 69 58.0
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 6.0e-16 87.4 78 55.1
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 6.0e-16 87.4 73 60.3
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.0e-15 86.7 75 56.0
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 1.0e-15 86.7 81 53.1
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.0e-15 86.7 63 58.7
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 1.7e-15 85.9 73 60.3
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.7e-15 85.9 60 65.0
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.3e-15 85.5 81 53.1
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.3e-15 85.5 83 55.4
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 2.3e-15 85.5 72 54.2
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 3.0e-15 85.1 76 57.9
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.0e-15 85.1 87 52.9
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 3.9e-15 84.7 77 53.2
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 5.1e-15 84.3 62 59.7
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.6e-15 84.0 67 55.2
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.6e-15 84.0 84 53.6
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 6.6e-15 84.0 81 55.6
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 6.6e-15 84.0 84 44.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.1e-14 83.2 80 52.5
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.1e-14 83.2 80 52.5
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.5e-14 82.8 62 59.7
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.9e-14 82.4 72 55.6
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.9e-14 82.4 63 58.7
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.5e-14 82.0 75 53.3
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.5e-14 82.0 79 46.8
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.3e-14 81.6 80 47.5
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.3e-14 81.6 63 61.9
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 3.3e-14 81.6 59 59.3
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.3e-14 81.3 84 48.8
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.6e-14 80.9 81 49.4
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 5.6e-14 80.9 80 48.8
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.3e-14 80.5 58 62.1
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 7.3e-14 80.5 91 49.5
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 7.3e-14 80.5 79 54.4
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 9.6e-14 80.1 78 50.0
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 9.6e-14 80.1 77 53.2
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 1.2e-13 79.7 65 52.3
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.2e-13 79.7 61 62.3
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.1e-13 79.0 79 53.2
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 2.1e-13 79.0 50 70.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 4.7e-13 77.8 65 60.0
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 6.2e-13 77.4 85 45.9
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 8.1e-13 77.0 75 45.3
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-12 76.6 61 60.7
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.4e-12 76.3 79 49.4
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.8e-12 75.9 75 45.3
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.8e-12 75.9 86 43.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.8e-12 75.9 63 60.3
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.8e-12 75.9 48 68.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.8e-12 75.9 64 59.4
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 2.4e-12 75.5 75 48.0
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.4e-12 75.5 84 45.2
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 3.1e-12 75.1 66 60.6
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 4.0e-12 74.7 61 57.4
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 4.0e-12 74.7 61 57.4
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 5.3e-12 74.3 67 53.7
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.9e-12 73.9 79 45.6
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 6.9e-12 73.9 61 59.0
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 9.0e-12 73.6 74 54.1
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 9.0e-12 73.6 71 56.3
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 9.0e-12 73.6 48 66.7
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.2e-11 73.2 76 47.4
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.2e-11 73.2 62 58.1
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.2e-11 73.2 57 59.6
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.2e-11 73.2 57 59.6
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.5e-11 72.8 67 49.3
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.0e-11 72.4 88 43.2
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 3.4e-11 71.6 60 53.3
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.4e-11 71.6 49 63.3
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 4.4e-11 71.2 59 61.0
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 4.4e-11 71.2 77 49.4
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 4.4e-11 71.2 77 49.4
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 5.8e-11 70.9 57 56.1
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 5.8e-11 70.9 57 56.1
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 7.6e-11 70.5 74 44.6
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.9e-11 70.1 59 54.2
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 9.9e-11 70.1 68 52.9
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.9e-11 70.1 57 57.9
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 9.9e-11 70.1 59 61.0
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.7e-10 69.3 48 66.7
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 2.2e-10 68.9 80 45.0
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 2.2e-10 68.9 73 42.5
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.9e-10 68.6 77 42.9
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 4.9e-10 67.8 59 55.9
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 6.4e-10 67.4 72 47.2
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 6.4e-10 67.4 55 52.7
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 8.4e-10 67.0 46 67.4
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 5.4e-09 64.3 65 55.4
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 7.1e-09 63.9 70 48.6
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 9.3e-09 63.5 46 56.5
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.6e-08 61.2 61 50.8
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 4.6e-08 61.2 46 58.7
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.7e-07 59.3 49 53.1
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.7e-07 59.3 61 45.9
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.0e-07 58.5 61 49.2
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 3.0e-07 58.5 41 58.5


User provided reference genes

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