Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.2e-189 666.4 334 100.0
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.0e-181 639.0 335 94.9
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.7e-178 628.6 337 93.8
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 3.5e-178 628.2 336 93.2
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 8.4e-164 580.5 332 86.7
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.2e-162 576.6 332 86.4
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.1e-162 575.9 337 85.2
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 2.3e-161 572.4 333 85.3
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 5.1e-161 571.2 329 86.3
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 3.3e-160 568.5 329 85.4
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.4e-158 563.1 330 84.5
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 9.0e-158 560.5 330 83.9
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 1.5e-152 543.1 331 80.7
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.6e-151 539.7 331 80.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.1e-151 539.3 331 79.8
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 8.1e-151 537.3 331 79.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.1e-150 537.0 336 80.1
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.4e-150 536.6 331 79.8
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.8e-150 536.2 333 79.6
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.4e-150 535.8 332 79.5
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 3.1e-150 535.4 335 79.1
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 4.0e-150 535.0 331 79.5
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 6.9e-150 534.3 321 80.4
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 9.0e-150 533.9 332 80.1
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.2e-149 533.5 330 78.2
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.2e-149 533.5 337 79.2
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.5e-149 533.1 332 78.9
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-149 532.3 335 78.8
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.7e-148 529.6 331 77.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.8e-148 528.5 326 79.1
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 8.4e-148 527.3 332 78.3
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 8.4e-148 527.3 328 79.0
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.9e-147 526.2 330 78.5
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 3.2e-147 525.4 332 78.0
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.2e-146 523.5 326 78.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.6e-146 523.1 326 78.5
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-146 523.1 339 77.6
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.6e-146 523.1 333 77.5
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.7e-146 522.3 322 78.0
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 4.6e-146 521.5 331 78.2
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 6.0e-146 521.2 340 77.1
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.0e-145 520.4 326 77.9
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.0e-145 520.4 329 77.8
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.0e-145 520.4 322 78.6
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.8e-145 519.6 337 77.7
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.8e-145 519.6 319 79.3
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.8e-145 519.6 335 76.4
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 8.7e-145 517.3 333 78.4
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.1e-144 516.9 330 77.3
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.5e-144 516.5 331 75.5
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.5e-144 516.5 334 77.8
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.3e-144 515.4 352 74.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 3.3e-144 515.4 328 78.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 9.6e-144 513.8 333 75.7
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.8e-142 509.6 322 78.9
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 4.0e-142 508.4 333 74.5
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 4.0e-142 508.4 340 73.5
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 4.0e-142 508.4 320 77.5
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.3e-142 508.1 339 73.7
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 6.9e-142 507.7 333 74.5
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 9.0e-142 507.3 338 74.0
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.2e-141 506.9 335 75.5
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.2e-141 506.9 352 74.1
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.6e-141 505.8 372 69.6
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.4e-141 505.4 330 74.5
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.4e-141 505.4 325 76.0
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 3.4e-141 505.4 377 69.0
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 5.8e-141 504.6 328 74.7
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.7e-140 503.1 339 72.9
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.7e-140 503.1 339 72.9
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.7e-140 503.1 337 75.1
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.9e-140 501.5 324 76.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.1e-139 500.4 338 73.1
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.1e-139 500.4 325 76.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.4e-139 500.0 337 74.5
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.5e-139 499.2 322 77.0
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 3.2e-139 498.8 327 75.2
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 9.3e-139 497.3 331 74.3
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.2e-138 496.9 333 73.0
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.6e-138 496.5 326 75.8
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.6e-138 496.5 373 68.6
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.6e-138 496.5 368 69.0
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 7.9e-138 494.2 327 75.8
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.0e-137 493.8 327 75.8
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.1e-136 490.3 330 73.9
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.9e-136 489.6 331 74.3
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 3.3e-136 488.8 400 65.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 9.0e-134 480.7 327 74.9
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 7.6e-133 477.6 307 75.6
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 8.4e-132 474.2 335 72.2
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.9e-131 473.0 321 72.6
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 5.7e-128 461.5 335 68.1
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.7e-127 458.8 331 70.1
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.2e-125 453.8 340 68.8
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 7.2e-123 444.5 337 66.5
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 6.1e-122 441.4 335 65.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 4.8e-119 431.8 323 65.6
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 9.1e-118 427.6 247 82.2
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.6e-117 426.0 336 62.8
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.7e-116 423.3 249 81.5
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.2e-114 417.2 243 80.7
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.6e-112 409.5 247 78.1
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 5.7e-112 408.3 247 79.4
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.7e-106 389.4 305 64.9
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.7e-106 389.4 318 62.9
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 4.4e-104 382.1 373 58.4
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 2.2e-103 379.8 242 74.4
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.8e-103 379.4 337 62.9
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 4.1e-102 375.6 332 59.6
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.3e-92 344.0 326 56.4
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 7.5e-88 328.2 196 78.6
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 5.9e-77 292.0 236 61.9
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 6.6e-68 261.9 197 65.5
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 9.5e-67 258.1 339 44.0
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.0e-64 250.4 217 62.2
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.1e-62 244.6 134 86.6
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 3.2e-62 243.0 270 48.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 3.2e-62 243.0 138 84.1
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 9.2e-62 241.5 349 42.7
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 3.4e-56 223.0 127 81.1
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 7.8e-53 211.8 241 46.5
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.3e-38 161.8 132 67.4
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 2.7e-37 160.2 132 66.7
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-35 154.5 140 64.3
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-35 154.1 162 48.1
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.4e-35 152.1 125 67.2
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.4e-35 152.1 125 67.2
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 9.6e-35 151.8 123 66.7
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.1e-34 150.6 125 66.4
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 2.8e-34 150.2 109 70.6
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 6.9e-33 145.6 108 70.4
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-25 121.3 209 40.7
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 4.2e-22 109.8 99 62.6
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 7.1e-22 109.0 78 67.9
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.5e-19 100.5 72 62.5
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.8e-18 96.3 81 58.0
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.4e-17 94.0 73 65.8
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.0e-15 88.6 70 71.4
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.9e-15 87.0 199 35.2
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 6.5e-15 85.9 77 62.3
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.9e-14 84.3 213 30.0
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 3.2e-14 83.6 64 65.6
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.3e-12 78.2 68 63.2
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 6.7e-12 75.9 53 71.7
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 3.3e-11 73.6 51 70.6
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.4e-06 58.2 78 39.7
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 1.9e-06 57.8 186 26.9
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 3.2e-06 57.0 176 28.4
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 4.2e-06 56.6 54 51.9


User provided reference genes

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