Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 5.9e-208 727.6 461 100.0
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 1.5e-155 553.5 457 72.4
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 8.1e-141 504.6 462 61.3
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.3e-138 497.3 441 68.9
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 3.6e-133 479.2 444 61.0
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 6.2e-133 478.4 447 60.9
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.1e-132 477.6 443 60.5
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 4.1e-129 465.7 461 58.4
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 6.2e-125 451.8 481 55.5
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 3.8e-122 442.6 444 59.2
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.6e-109 400.6 454 53.7
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.8e-108 397.1 436 52.1
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.1e-108 396.4 450 50.7
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 6.7e-103 378.6 377 56.5
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 3.3e-102 376.3 448 48.9
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 9.6e-102 374.8 377 56.0
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.6e-101 374.0 287 67.9
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 4.0e-100 369.4 436 48.2
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 5.3e-100 369.0 444 47.7
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 6.9e-100 368.6 436 48.4
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.2e-99 367.9 441 53.3
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 3.4e-99 366.3 436 53.2
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 4.5e-99 365.9 436 50.9
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 1.0e-98 364.8 440 48.4
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 2.2e-98 363.6 440 49.1
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 6.5e-98 362.1 441 47.6
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.6e-96 355.9 378 54.5
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.0e-95 354.8 436 49.8
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 1.0e-95 354.8 429 52.4
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 3.0e-95 353.2 441 47.4
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 6.7e-95 352.1 551 42.8
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.3e-94 349.7 390 52.6
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 7.4e-94 348.6 436 52.5
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 9.6e-94 348.2 440 46.1
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 2.1e-93 347.1 376 51.9
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 8.2e-93 345.1 437 52.9
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.1e-92 344.7 477 44.0
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.8e-92 344.0 440 45.9
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 6.9e-92 342.0 440 46.8
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 6.9e-92 342.0 439 51.7
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 5.5e-89 332.4 440 43.4
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 2.3e-87 327.0 436 44.7
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.0e-87 326.6 440 49.5
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 3.0e-87 326.6 436 46.6
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.1e-86 324.7 431 45.0
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 7.4e-86 322.0 377 47.7
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 2.8e-85 320.1 435 43.7
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 4.8e-85 319.3 376 49.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 8.2e-85 318.5 370 49.2
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.1e-84 318.2 377 47.5
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 1.4e-84 317.8 441 48.8
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.1e-84 316.6 378 47.6
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.0e-83 313.9 441 49.4
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 4.5e-83 312.8 442 42.1
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.9e-83 312.4 441 42.2
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 5.9e-83 312.4 442 41.9
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 7.7e-83 312.0 442 41.6
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-82 311.6 456 43.9
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.3e-82 311.2 377 48.0
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 1.3e-82 311.2 436 48.2
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 2.9e-82 310.1 436 45.9
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 3.8e-82 309.7 435 43.0
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.5e-82 308.9 326 54.9
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 8.5e-82 308.5 441 43.1
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 2.5e-81 307.0 442 42.1
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 1.2e-80 304.7 441 45.8
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.1e-80 303.9 376 54.3
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 2.7e-80 303.5 441 48.5
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 4.6e-80 302.8 442 39.4
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.0e-79 301.6 440 46.6
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.4e-79 301.2 451 41.2
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.8e-79 300.8 440 48.4
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 2.3e-79 300.4 440 47.7
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 3.0e-79 300.1 440 42.3
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 2.0e-78 297.4 449 41.4
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 3.3e-78 296.6 458 40.6
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 3.3e-78 296.6 458 40.6
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 3.3e-78 296.6 436 44.3
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 7.4e-78 295.4 463 44.9
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 1.3e-77 294.7 436 47.0
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.3e-77 294.7 440 46.6
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 8.2e-77 292.0 458 40.4
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 1.1e-76 291.6 442 44.1
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.8e-76 290.8 442 44.3
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 2.4e-76 290.4 487 41.5
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 4.1e-76 289.7 440 40.9
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 6.9e-76 288.9 445 45.8
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 9.1e-76 288.5 441 43.5
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 1.5e-75 287.7 356 48.0
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 2.6e-75 287.0 440 40.5
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.5e-75 286.2 442 44.1
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.5e-75 286.2 467 43.7
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.9e-74 283.5 436 47.5
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 3.2e-73 280.0 500 38.0
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 4.2e-73 279.6 441 41.5
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.1e-72 275.8 440 46.1
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 2.3e-71 273.9 306 49.0
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.5e-70 271.2 544 36.2
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 4.4e-70 269.6 450 45.6
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.7e-69 267.7 376 50.3
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 2.8e-69 266.9 441 47.6
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.8e-68 264.2 376 43.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.1e-68 263.1 471 39.1
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.9e-65 254.2 376 42.0
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 2.7e-64 250.4 467 36.4
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 2.6e-62 243.8 349 48.7
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 6.3e-61 239.2 440 39.3
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 5.0e-58 229.6 340 46.2
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 2.5e-57 227.3 251 48.6
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 1.2e-56 224.9 451 34.8
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 1.0e-55 221.9 440 32.7
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.0e-54 217.6 328 41.5
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 9.1e-52 208.8 441 40.4
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.5e-51 206.5 615 32.0
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 2.9e-50 203.8 222 59.0
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 3.8e-50 203.4 148 70.3
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 5.5e-49 199.5 448 34.2
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.4e-47 194.9 381 34.1
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 7.5e-46 189.1 353 38.0
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.8e-44 184.5 208 46.6
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.6e-43 181.4 210 51.4
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 7.8e-43 179.1 381 32.3
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.3e-41 173.3 415 33.3
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 2.1e-40 171.0 343 39.9
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.3e-39 167.5 204 46.1
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 4.4e-38 163.3 257 38.9
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 6.4e-37 159.5 309 37.2
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 1.9e-33 147.9 209 39.7
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 6.8e-31 139.4 166 51.8
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 6.4e-29 132.9 139 43.9
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 3.2e-28 130.6 357 30.0
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 5.4e-28 129.8 181 43.6
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.9e-20 104.8 379 24.5
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 2.1e-19 101.3 99 46.5
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 1.5e-17 95.1 253 26.5
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.5e-17 94.4 377 27.3
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.5e-17 94.4 79 58.2
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 3.3e-17 94.0 56 87.5
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 7.3e-17 92.8 86 62.8
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.5e-17 92.4 136 40.4
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.2e-16 89.7 77 57.1
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.1e-15 89.0 150 41.3
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 8.9e-15 85.9 153 39.9
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 1.2e-14 85.5 201 29.9
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.1e-12 79.0 325 28.6
TPR.G40486 Trifolium pratense HOM05D004546 ORTHO05D005419 1.9e-12 78.2 103 78.6
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.0e-10 72.4 137 38.7
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-09 68.6 74 54.1
arahy.Tifrunner.gnm1.ann1.MTQ0B2 Arachis hypogaea HOM05D004546 ORTHO05D005419 7.3e-09 66.2 112 47.3
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 2.8e-08 64.3 82 47.6
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 3.6e-08 63.9 80 37.5
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 4.0e-07 60.5 374 28.3
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 9.9e-06 55.8 154 27.9


User provided reference genes

Program Settings