Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 1.2e-209 733.0 399 100.0
Ca_03843_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 6.6e-115 418.3 429 58.0
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 7.1e-93 345.1 434 49.8
Medtr8g089500 Medicago truncatula HOM05D008992 ORTHO05D002272 1.2e-89 334.3 415 50.6
TPR.G6199 Trifolium pratense HOM05D008992 ORTHO05D002272 1.3e-83 314.3 506 43.5
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 1.7e-83 313.9 530 41.9
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 3.0e-83 313.2 410 49.5
Medtr2g006000 Medicago truncatula HOM05D008992 ORTHO05D002272 6.6e-83 312.0 415 48.9
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 7.3e-82 308.5 428 47.4
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 2.1e-76 290.4 504 41.7
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 1.6e-73 280.8 447 42.7
Ca_16626_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 7.9e-68 261.9 326 51.5
Psat0s921g0280 Pisum sativum HOM05D008992 ORTHO05D002272 1.7e-62 244.2 402 42.0
Psat0s3155g0080 Pisum sativum HOM05D008992 ORTHO05D002272 2.2e-62 243.8 401 42.4
VMungo0251G0856 Vigna mungo HOM05D008992 ORTHO05D002272 1.3e-54 218.0 329 43.2
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 2.6e-47 193.7 227 49.3
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 1.7e-46 191.0 266 44.7
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 3.6e-44 183.3 399 34.6
Medtr4g417280 Medicago truncatula HOM05D000053 ORTHO05D002272 3.9e-43 179.9 376 39.1
TPR.G35385 Trifolium pratense HOM05D008992 ORTHO05D002272 2.0e-42 177.6 210 51.9
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 4.3e-42 176.4 376 36.4
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 2.6e-39 167.2 204 46.6
Medtr4g417290 Medicago truncatula HOM05D008992 ORTHO05D002272 2.2e-38 164.1 229 48.9
Medtr8g089435 Medicago truncatula HOM05D008992 ORTHO05D002272 7.2e-37 159.1 205 49.3
Lj4g0011648 Lotus japonicus HOM05D008992 ORTHO05D002272 9.4e-37 158.7 211 47.4
Lalb_Chr07g0190491 Lupinus albus HOM05D008992 ORTHO05D002272 8.8e-35 152.1 191 46.1
Medtr2g022010 Medicago truncatula HOM05D008992 ORTHO05D002272 1.1e-32 145.2 250 42.4
Medtr8g089540 Medicago truncatula HOM05D008992 ORTHO05D002272 5.0e-30 136.3 183 49.2
arahy.Tifrunner.gnm1.ann1.1MNX0Y Arachis hypogaea HOM05D008992 ORTHO05D002272 6.7e-27 125.9 193 40.9
arahy.Tifrunner.gnm1.ann1.C8FNMN Arachis hypogaea HOM05D008992 ORTHO05D002272 7.5e-26 122.5 237 35.0
Lalb_Chr12g0204211 Lupinus albus HOM05D008992 ORTHO05D002272 6.3e-25 119.4 191 37.2
Hma1.2p1_1114F.1_g258730 Hydrangea macrophylla HOM05D002972 ORTHO05D002272 1.1e-24 118.6 253 33.6
Rhsim08G0123100 Rhododendron simsii HOM05D002972 ORTHO05D002272 1.1e-21 108.6 227 35.2
Dinv41127 Davidia involucrata HOM05D002972 ORTHO05D002272 3.6e-20 103.6 165 41.2
Dinv29033 Davidia involucrata HOM05D002972 ORTHO05D002272 1.4e-19 101.7 165 40.6
COL.COLO4_31049 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.0e-19 100.5 319 30.1
Dinv05661 Davidia involucrata HOM05D002972 ORTHO05D002272 3.0e-19 100.5 165 40.0
Duzib264G0210 Durio zibethinus HOM05D000126 ORTHO05D000085 1.2e-18 98.6 192 35.4
CSS0037442 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 1.5e-18 98.2 312 29.8
Thecc.01G020000 Theobroma cacao HOM05D000126 ORTHO05D000085 3.4e-18 97.1 192 33.3
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 7.5e-18 95.9 149 42.3
Duzib147G1519 Durio zibethinus HOM05D000126 ORTHO05D000085 7.5e-18 95.9 192 33.9
COL.COLO4_21920 Corchorus olitorius HOM05D000126 ORTHO05D002272 2.2e-17 94.4 189 34.4
Ciclev10025208m.g Citrus clementina HOM05D000126 ORTHO05D000085 3.1e-16 90.5 109 44.0
Peaxi162Scf00015g00238 Petunia axillaris HOM05D002972 ORTHO05D002272 5.4e-16 89.7 225 31.1
AUR62007622 Chenopodium quinoa HOM05D001706 ORTHO05D001789 1.6e-15 88.2 251 34.3
Duzib147G0607 Durio zibethinus HOM05D002972 ORTHO05D002272 1.6e-15 88.2 231 29.4
Manes.01G145200 Manihot esculenta HOM05D000126 ORTHO05D000085 5.9e-15 86.3 113 39.8
CAN.G438.50 Capsicum annuum HOM05D002972 ORTHO05D002272 7.7e-15 85.9 246 30.9
Peaxi162Scf00015g00226 Petunia axillaris HOM05D002972 ORTHO05D002272 1.0e-14 85.5 209 31.1
Glyma.08G129502 Glycine max HOM05D008992 ORTHO05D002272 1.7e-14 84.7 152 36.2
Peaxi162Scf00126g10126 Petunia axillaris HOM05D002972 ORTHO05D002272 1.7e-14 84.7 206 31.6
Sopen03g039260 Solanum pennellii HOM05D002972 ORTHO05D002272 2.9e-14 84.0 198 32.8
PGSC0003DMG400002638 Solanum tuberosum HOM05D002972 ORTHO05D002272 5.0e-14 83.2 209 31.6
Lj4A209T44 Lonicera japonica HOM05D002972 ORTHO05D002272 8.5e-14 82.4 192 30.2
Sopen03g039250 Solanum pennellii HOM05D002972 ORTHO05D002272 1.1e-13 82.0 209 30.6
Glyma.04G003100 Glycine max HOM05D002972 ORTHO05D002272 1.5e-13 81.6 212 27.8
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 1.5e-13 81.6 190 28.9
CSS0006608 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 2.5e-13 80.9 205 31.2
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 2.5e-13 80.9 131 35.9
TWI09G0202 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 2.5e-13 80.9 274 28.1
Solyc03g120360.1 Solanum lycopersicum HOM05D002972 ORTHO05D002272 3.2e-13 80.5 337 27.3
Phvul.007G019100 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 5.5e-13 79.7 215 27.0
PGSC0003DMG400002637 Solanum tuberosum HOM05D002972 ORTHO05D002272 2.1e-12 77.8 274 29.6
TWI09G0157 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 2.1e-12 77.8 234 30.3
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 2.7e-12 77.4 226 27.4
Nitab4.5_0003885g0010 Nicotiana tabacum HOM05D002972 ORTHO05D002272 2.7e-12 77.4 336 25.6
SalBow6G4808 Salvia bowleyana HOM05D002972 ORTHO05D002272 2.7e-12 77.4 279 26.9
TWI75G0621 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 3.6e-12 77.0 196 27.6
Cc07_g10090 Coffea canephora HOM05D002972 ORTHO05D002272 4.7e-12 76.6 211 29.4
COL.COLO4_22003 Corchorus olitorius HOM05D002972 ORTHO05D002272 4.7e-12 76.6 236 28.4
Nitab4.5_0003159g0070 Nicotiana tabacum HOM05D002972 ORTHO05D002272 4.7e-12 76.6 267 27.3
CANSAT25G2833 Cannabis sativa HOM05D002972 ORTHO05D002272 6.1e-12 76.3 338 24.9
TWI79G0168 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 6.1e-12 76.3 365 28.2
TWI18G1012 Tripterygium wilfordii HOM05D000555 ORTHO05D000646 1.4e-11 75.1 141 33.3
COL.COLO4_22001 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.8e-11 74.7 129 34.1
MELO3C020825.2 Cucumis melo HOM05D002972 ORTHO05D002272 2.3e-11 74.3 149 32.9
COL.COLO4_07334 Corchorus olitorius HOM05D002972 ORTHO05D002272 4.0e-11 73.6 212 29.7
Hund14008 Selenicereus undatus HOM05D002972 ORTHO05D002272 8.8e-11 72.4 298 26.5
Dinv10222 Davidia involucrata HOM05D002972 ORTHO05D002272 1.2e-10 72.0 101 43.6
VMungo0720G1914 Vigna mungo HOM05D002972 ORTHO05D002272 2.0e-10 71.2 142 27.5
Dinv37647 Davidia involucrata HOM05D002972 ORTHO05D002272 2.6e-10 70.9 191 28.8
Lj4A209T45 Lonicera japonica HOM05D002972 ORTHO05D002272 2.6e-10 70.9 331 25.1
A03p46120 Brassica napus HOM05D002972 ORTHO05D002272 4.4e-10 70.1 162 32.1
Hund14010 Selenicereus undatus HOM05D002972 ORTHO05D002272 4.4e-10 70.1 355 23.9
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 5.7e-10 69.7 334 27.8
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 9.8e-10 68.9 203 27.1
Glyma.10G281600 Glycine max HOM05D002972 ORTHO05D002272 9.8e-10 68.9 142 28.2
Nitab4.5_0000580g0290 Nicotiana tabacum HOM05D012638 ORTHO05D002272 9.8e-10 68.9 134 33.6
Sed0018187 Sechium edule HOM05D002972 ORTHO05D002272 2.2e-09 67.8 149 30.9
BraA08t33603Z Brassica rapa HOM05D002972 ORTHO05D002272 2.8e-09 67.4 167 30.5
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 3.7e-09 67.0 154 27.3
PGR142G3650 Punica granatum HOM05D002972 ORTHO05D002272 3.7e-09 67.0 145 29.7
EL10As8g23886 Beta vulgaris HOM05D002972 ORTHO05D002272 4.9e-09 66.6 151 31.8
BcaB03g11788 Brassica carinata HOM05D002972 ORTHO05D002272 4.9e-09 66.6 116 34.5
BcaC01g00847 Brassica carinata HOM05D002972 ORTHO05D002272 6.3e-09 66.2 152 30.3
C03p85160 Brassica napus HOM05D002972 ORTHO05D002272 6.3e-09 66.2 152 30.3
BolC3t20805H Brassica oleracea HOM05D002972 ORTHO05D002272 6.3e-09 66.2 152 30.3
CARHR294290 Cardamine hirsuta HOM05D002972 ORTHO05D002272 6.3e-09 66.2 228 25.0
vmacro17724 Vaccinium macrocarpon HOM05D002972 ORTHO05D002272 6.3e-09 66.2 148 33.1
A08p16350 Brassica napus HOM05D002972 ORTHO05D002272 8.3e-09 65.9 164 30.5
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.1e-08 65.5 212 29.7
Gohir.A03G205300 Gossypium hirsutum HOM05D002972 ORTHO05D002272 1.1e-08 65.5 151 29.8
Medtr5g046650 Medicago truncatula HOM05D008992 ORTHO05D002272 1.4e-08 65.1 81 46.9
Lalb_Chr06g0163671 Lupinus albus HOM05D002972 ORTHO05D002272 1.8e-08 64.7 302 24.5
Nitab4.5_0003441g0060 Nicotiana tabacum HOM05D012638 ORTHO05D002272 1.8e-08 64.7 145 33.8
Glyma.20G107600 Glycine max HOM05D002972 ORTHO05D002272 2.4e-08 64.3 165 26.7
Gorai.005G254500 Gossypium raimondii HOM05D002972 ORTHO05D002272 4.1e-08 63.5 144 29.9
CAN.G774.15 Capsicum annuum HOM05D012638 ORTHO05D002272 5.4e-08 63.2 117 34.2
Cpa.g.sc6.240 Carica papaya HOM05D000126 ORTHO05D002272 5.4e-08 63.2 94 38.3
ECA247G2469 Erigeron canadensis HOM05D000555 ORTHO05D000646 5.4e-08 63.2 127 30.7
QL07p013092 Quercus lobata HOM05D030119 ORTHO05D002272 5.4e-08 63.2 206 25.7
Gohir.D02G226600 Gossypium hirsutum HOM05D002972 ORTHO05D002272 7.0e-08 62.8 139 31.7
Lalb_Chr08g0246731 Lupinus albus HOM05D002972 ORTHO05D002272 7.0e-08 62.8 212 27.4
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 9.2e-08 62.4 181 30.4
BraA03t13740Z Brassica rapa HOM05D002972 ORTHO05D002272 1.2e-07 62.0 156 30.1
ECA247G3063 Erigeron canadensis HOM05D000555 ORTHO05D000646 1.2e-07 62.0 127 28.3
CAN.G774.17 Capsicum annuum HOM05D012638 ORTHO05D002272 1.6e-07 61.6 108 34.3
SalBow1G2737 Salvia bowleyana HOM05D012638 ORTHO05D002272 1.6e-07 61.6 184 26.6
PGSC0003DMG400019830 Solanum tuberosum HOM05D015155 ORTHO05D002272 1.6e-07 61.6 196 29.1
Sp3g30180 Schrenkiella parvula HOM05D002972 ORTHO05D002272 2.7e-07 60.8 163 30.7
AT4G38560 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 4.5e-07 60.1 221 25.3
Lalb_Chr12g0204191 Lupinus albus HOM05D008992 ORTHO05D002272 4.5e-07 60.1 93 38.7
Dinv21340 Davidia involucrata HOM05D002972 ORTHO05D002272 5.9e-07 59.7 161 27.3
Oeu028335.1 Olea europaea HOM05D000555 ORTHO05D002272 5.9e-07 59.7 166 27.7
Aa31LG2G15380 Aethionema arabicum HOM05D002972 ORTHO05D002272 7.7e-07 59.3 116 31.0
CARHR107190 Cardamine hirsuta HOM05D002972 ORTHO05D002272 7.7e-07 59.3 157 28.0
Thhalv10022729m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 7.7e-07 59.3 211 25.6
AL7G10450 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 1.0e-06 58.9 195 25.1
ECA247G2489 Erigeron canadensis HOM05D000555 ORTHO05D000646 1.0e-06 58.9 150 30.0
unitig_0.g1105 Utricularia gibba HOM05D002972 ORTHO05D002272 1.3e-06 58.5 142 28.9
Manes.11G065600 Manihot esculenta HOM05D000555 ORTHO05D000646 1.7e-06 58.2 129 30.2
TAR374G0968 Trochodendron aralioides HOM05D008992 ORTHO05D002272 1.7e-06 58.2 180 27.8
COL.COLO4_17698 Corchorus olitorius HOM05D002972 ORTHO05D002272 2.3e-06 57.8 121 28.9
PGSC0003DMG400019829 Solanum tuberosum HOM05D000555 ORTHO05D000646 2.3e-06 57.8 96 34.4
ECA247G0643 Erigeron canadensis HOM05D002069 ORTHO05D002997 2.9e-06 57.4 139 32.4
HanXRQChr02g0033881 Helianthus annuus HOM05D002069 ORTHO05D002997 2.9e-06 57.4 155 28.4
Sp4g00150 Schrenkiella parvula HOM05D002972 ORTHO05D002272 2.9e-06 57.4 211 28.0
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 3.8e-06 57.0 235 22.6
Solyc03g116930.3 Solanum lycopersicum HOM05D000555 ORTHO05D000646 3.8e-06 57.0 115 30.4
Sopen03g035870 Solanum pennellii HOM05D000555 ORTHO05D000646 3.8e-06 57.0 133 30.8
Migut.I00843 Erythranthe guttata HOM05D002972 ORTHO05D002272 5.0e-06 56.6 252 23.4
Carub.0003s3071 Capsella rubella HOM05D002972 ORTHO05D002272 6.6e-06 56.2 151 26.5
ECA247G1059 Erigeron canadensis HOM05D000593 ORTHO05D002268 6.6e-06 56.2 147 27.9
ECA247G4030 Erigeron canadensis HOM05D009001 ORTHO05D011396 6.6e-06 56.2 129 27.9
THA.LOC104819651 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 6.6e-06 56.2 144 26.4
CAN.G774.16 Capsicum annuum HOM05D012638 ORTHO05D002272 8.6e-06 55.8 110 31.8
HanXRQChr02g0033861 Helianthus annuus HOM05D002972 ORTHO05D002272 8.6e-06 55.8 136 30.1


User provided reference genes

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