Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17793_v3 Cicer arietinum L. HOM05D007493 ORTHO05D009465 5.3e-20 100.1 53 100.0
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 8.1e-13 76.3 65 64.6
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 1.8e-12 75.1 62 69.4
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 1.8e-12 75.1 62 69.4
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 2.4e-12 74.7 62 67.7
BcaB03g15377 Brassica carinata HOM05D000053 ORTHO05D000035 9.0e-12 72.8 43 83.7
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 1.5e-11 72.0 65 63.1
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 9.9e-11 69.3 62 62.9
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 2.2e-10 68.2 62 62.9
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 2.2e-10 68.2 62 61.3
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 2.9e-10 67.8 62 61.3
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 6.4e-10 66.6 62 61.3
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 8.4e-10 66.2 62 64.5
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 8.4e-10 66.2 62 64.5
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 1.4e-09 65.5 62 59.7
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 69.1
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 1.9e-09 65.1 55 65.5
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 1.9e-09 65.1 55 65.5
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 1.9e-09 65.1 55 65.5
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 2.4e-09 64.7 62 62.9
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 2.4e-09 64.7 55 65.5
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 2.4e-09 64.7 62 59.7
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 4.2e-09 63.9 55 63.6
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 4.2e-09 63.9 55 63.6
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 5.5e-09 63.5 62 62.9
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 5.5e-09 63.5 60 61.7
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 7.1e-09 63.2 59 62.7
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 7.1e-09 63.2 55 63.6
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 7.1e-09 63.2 59 62.7
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 7.1e-09 63.2 62 56.5
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 7.1e-09 63.2 62 61.3
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 7.1e-09 63.2 55 63.6
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 9.3e-09 62.8 55 61.8
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 9.3e-09 62.8 62 61.3
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 1.6e-08 62.0 63 60.3
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 1.6e-08 62.0 60 56.7
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 1.6e-08 62.0 55 63.6
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 2.1e-08 61.6 55 65.5
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 2.1e-08 61.6 59 61.0
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 2.1e-08 61.6 62 61.3
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 2.7e-08 61.2 55 61.8
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 2.7e-08 61.2 62 61.3
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 3.5e-08 60.8 65 60.0
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 3.5e-08 60.8 56 64.3
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 3.5e-08 60.8 62 61.3
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 4.6e-08 60.5 55 61.8
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 4.6e-08 60.5 62 58.1
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 4.6e-08 60.5 59 61.0
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 4.6e-08 60.5 62 56.5
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 6.0e-08 60.1 59 55.9
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 6.0e-08 60.1 62 59.7
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 7.9e-08 59.7 60 55.0
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 7.9e-08 59.7 63 58.7
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.3e-07 58.9 59 54.2
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 1.3e-07 58.9 63 50.8
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 1.8e-07 58.5 56 57.1
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 2.3e-07 58.2 59 52.5
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 2.3e-07 58.2 56 60.7
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 2.3e-07 58.2 56 60.7
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 2.3e-07 58.2 62 56.5
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 3.0e-07 57.8 62 54.8
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 3.9e-07 57.4 55 58.2
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 3.9e-07 57.4 62 58.1
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 8.7e-07 56.2 62 54.8
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 1.1e-06 55.8 62 53.2
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.1e-06 55.8 55 56.4
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.1e-06 55.8 55 56.4
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.1e-06 55.8 55 56.4
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 1.1e-06 55.8 62 54.8
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.5e-06 55.5 55 54.5
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 2.5e-06 54.7 82 46.3
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 2.5e-06 54.7 62 48.4
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 2.5e-06 54.7 60 48.3
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 5.6e-06 53.5 60 46.7
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 5.6e-06 53.5 60 48.3
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 7.4e-06 53.1 62 53.2
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 9.6e-06 52.8 55 54.5
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 9.6e-06 52.8 60 46.7


User provided reference genes

Program Settings