Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 3.3e-187 658.3 353 100.0
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 3.6e-149 531.9 384 76.3
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 5.8e-139 498.0 358 76.5
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 3.2e-137 492.3 356 75.3
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 9.6e-126 454.1 338 71.0
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 8.9e-124 447.6 343 70.3
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 7.1e-121 438.0 355 67.0
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 1.1e-118 430.6 341 67.7
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 1.9e-118 429.9 351 66.1
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 2.5e-118 429.5 342 68.1
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.5e-110 403.7 338 65.7
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 1.9e-110 403.3 345 64.1
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 9.6e-110 401.0 354 60.2
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 8.1e-109 397.9 345 62.3
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 2.6e-107 392.9 358 60.1
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 5.8e-107 391.7 333 62.2
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 2.9e-106 389.4 335 63.6
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 2.9e-106 389.4 335 63.6
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 6.4e-106 388.3 340 60.9
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.9e-105 386.7 347 59.7
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 3.2e-105 386.0 352 60.2
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.5e-105 385.2 337 60.5
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.5e-105 385.2 337 60.5
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.5e-105 385.2 337 60.5
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 5.5e-105 385.2 337 60.5
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 7.9e-104 381.3 352 58.8
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 3.9e-103 379.0 337 60.2
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 5.1e-103 378.6 357 59.1
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 5.1e-103 378.6 331 60.1
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 1.9e-102 376.7 346 60.4
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 5.6e-102 375.2 335 58.8
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 5.6e-102 375.2 333 60.7
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 5.6e-102 375.2 327 62.1
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 7.4e-102 374.8 354 58.5
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.3e-101 374.0 330 61.5
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 2.1e-101 373.2 341 60.1
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 4.8e-101 372.1 330 60.9
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 6.2e-101 371.7 305 63.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.1e-100 370.9 339 59.3
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 2.4e-100 369.8 350 58.9
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 1.5e-99 367.1 344 57.8
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 2.0e-99 366.7 364 55.8
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 5.8e-99 365.2 337 57.0
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 2.2e-98 363.2 355 56.3
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.9e-98 362.1 354 57.1
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.9e-97 360.1 334 58.4
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.2e-96 357.5 346 57.5
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 2.1e-96 356.7 345 57.7
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 3.5e-96 355.9 345 58.0
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 3.5e-96 355.9 355 54.9
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 6.0e-96 355.1 363 52.9
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.8e-95 353.6 333 57.7
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 3.0e-95 352.8 345 55.7
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 6.7e-95 351.7 357 56.0
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 8.7e-95 351.3 363 52.3
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.5e-94 350.5 274 63.5
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 2.5e-94 349.7 347 56.2
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 7.4e-94 348.2 364 52.7
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.6e-93 347.1 327 55.4
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 2.1e-93 346.7 338 58.6
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 2.1e-93 346.7 358 53.1
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 4.8e-93 345.5 336 57.4
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 1.1e-92 344.4 357 54.9
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 1.4e-92 344.0 354 52.5
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.8e-92 343.6 345 55.9
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 2.4e-92 343.2 351 53.8
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 2.4e-92 343.2 338 56.2
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 3.1e-92 342.8 348 52.9
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 4.1e-92 342.4 342 57.0
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 4.1e-92 342.4 345 54.5
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 6.9e-92 341.7 347 55.0
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 9.0e-92 341.3 339 57.5
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.5e-91 340.5 345 55.4
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 5.9e-91 338.6 333 53.2
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.2e-90 336.7 362 51.9
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 5.0e-90 335.5 335 55.2
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 6.5e-90 335.1 336 55.7
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 8.5e-90 334.7 351 50.7
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 8.5e-90 334.7 342 52.6
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 3.2e-89 332.8 366 51.9
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 3.2e-89 332.8 366 51.9
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 4.2e-89 332.4 333 53.8
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 4.6e-88 328.9 352 51.4
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 3.0e-87 326.2 340 51.5
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 8.7e-87 324.7 349 51.6
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 1.1e-86 324.3 341 54.0
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.1e-84 317.8 355 51.8
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 2.4e-84 316.6 334 52.7
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 3.1e-84 316.2 328 52.4
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 6.9e-84 315.1 346 55.2
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 6.9e-84 315.1 345 52.2
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 1.2e-83 314.3 344 52.6
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 2.9e-82 309.7 329 55.0
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 1.1e-81 307.8 325 50.2
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 1.1e-78 297.7 310 55.8
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 3.3e-78 296.2 330 51.2
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 4.1e-76 289.3 360 45.0
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.2e-75 287.7 217 66.8
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 3.6e-72 276.2 353 46.5
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 4.7e-72 275.8 335 49.0
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.6e-70 270.0 361 44.3
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.4e-68 263.5 194 64.9
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 2.3e-63 246.9 169 66.9
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 4.1e-60 236.1 334 42.2
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 7.0e-60 235.3 344 40.7
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 1.6e-59 234.2 332 40.1
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.2e-58 230.3 341 40.5
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.0e-54 217.2 132 75.8
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.3e-53 214.5 243 53.5
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.7e-53 214.2 211 54.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 2.3e-50 203.8 376 35.6
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 2.6e-46 190.3 131 65.6
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.0e-43 180.6 336 36.3
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.0e-42 178.3 322 42.5
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 3.0e-39 166.8 369 31.4
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 1.7e-37 161.0 324 37.3
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 6.4e-37 159.1 217 45.6
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 9.2e-36 155.2 339 31.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.2e-35 154.8 322 40.1
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 7.0e-28 129.0 257 38.1
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 1.0e-26 125.2 142 57.0
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 3.0e-26 123.6 136 44.1
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.5e-25 121.3 86 62.8
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 3.1e-23 113.6 132 54.5
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 2.6e-22 110.5 77 67.5
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 5.8e-22 109.4 71 67.6
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.5e-19 100.1 90 56.7
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 7.3e-17 92.4 83 55.4
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.8e-15 87.8 145 42.1
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 8.9e-15 85.5 146 29.5
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 6.4e-13 79.3 172 37.8
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 4.7e-08 63.2 110 27.3
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.4e-07 61.6 58 50.0
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 2.4e-07 60.8 150 38.7


User provided reference genes

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