Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 2.4e-156 555.4 276 100.0
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 3.2e-108 395.6 287 73.5
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 3.7e-101 372.1 296 69.3
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.5e-83 312.4 295 60.7
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 4.0e-55 219.2 340 44.4
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.0e-54 216.9 301 46.2
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.2e-53 213.4 313 44.7
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 3.8e-53 212.6 340 43.2
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 8.4e-53 211.5 308 45.8
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 2.1e-51 206.8 304 47.7
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.1e-47 194.5 306 44.1
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 2.5e-41 173.3 307 40.4
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.2e-40 170.2 341 38.1
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 5.5e-36 155.6 360 35.3
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 2.7e-35 153.3 289 39.4
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.7e-35 153.3 302 39.7
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.9e-35 151.8 306 36.6
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.9e-34 149.4 301 39.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 3.9e-34 149.4 307 37.1
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 3.9e-34 149.4 301 39.2
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 5.1e-34 149.1 346 35.8
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 8.8e-34 148.3 301 38.9
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 7.4e-33 145.2 295 38.3
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 9.7e-33 144.8 364 34.6
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 6.3e-32 142.1 349 36.7
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.3e-32 142.1 134 56.7
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 1.1e-31 141.4 144 53.5
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.4e-31 141.0 264 40.2
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.8e-31 140.6 220 39.1
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.8e-31 140.6 191 46.1
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.4e-31 140.2 153 49.7
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 5.3e-31 139.0 282 35.5
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.2e-30 137.9 347 31.4
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.2e-30 137.9 133 54.1
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.5e-30 137.5 223 40.4
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.5e-30 137.5 216 40.7
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.0e-30 137.1 142 52.8
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.0e-30 137.1 140 53.6
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.0e-30 137.1 133 54.1
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.6e-30 136.7 295 35.6
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 2.6e-30 136.7 139 52.5
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 7.7e-30 135.2 237 40.1
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.0e-29 134.8 351 31.3
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.7e-29 134.0 334 34.7
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 3.8e-29 132.9 306 33.7
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 3.8e-29 132.9 317 34.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.8e-29 132.9 164 45.1
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 5.0e-29 132.5 363 33.3
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 5.0e-29 132.5 323 36.5
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 5.0e-29 132.5 161 46.0
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.0e-29 132.5 136 53.7
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 6.5e-29 132.1 285 36.1
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 6.5e-29 132.1 285 36.1
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 6.5e-29 132.1 375 33.9
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 8.5e-29 131.7 153 47.1
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.4e-28 131.0 350 33.7
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.9e-28 130.6 175 41.1
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 3.2e-28 129.8 282 35.8
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 3.2e-28 129.8 175 46.3
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 3.2e-28 129.8 219 39.7
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 3.2e-28 129.8 219 39.7
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 4.2e-28 129.4 144 46.5
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.2e-28 129.4 288 36.1
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 4.2e-28 129.4 146 47.3
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.2e-28 129.4 125 52.0
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 7.2e-28 128.6 208 40.9
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 9.4e-28 128.3 326 33.1
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-27 127.9 282 35.8
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.6e-27 126.3 327 33.0
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.6e-27 126.3 206 39.8
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 6.1e-27 125.6 317 33.1
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 6.1e-27 125.6 321 32.1
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 8.0e-27 125.2 378 30.4
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.0e-26 124.8 135 47.4
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.0e-26 124.8 190 40.5
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.4e-26 124.4 239 37.7
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.8e-26 124.0 311 32.5
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.8e-26 124.0 311 32.5
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.8e-26 124.0 311 32.5
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 2.3e-26 123.6 375 30.4
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.3e-26 123.6 282 37.9
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 3.9e-26 122.9 116 56.0
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 5.2e-26 122.5 318 32.7
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 6.7e-26 122.1 310 33.2
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 8.8e-26 121.7 320 30.9
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 8.8e-26 121.7 332 31.6
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.5e-25 120.9 378 31.0
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.5e-25 120.9 359 32.0
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 3.3e-25 119.8 165 41.8
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 4.4e-25 119.4 124 49.2
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 7.4e-25 118.6 127 50.4
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 7.4e-25 118.6 301 33.6
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 7.4e-25 118.6 202 36.6
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 9.7e-25 118.2 145 44.1
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.7e-24 117.5 351 31.6
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.8e-24 115.9 354 31.1
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 6.3e-24 115.5 114 49.1
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 6.3e-24 115.5 259 32.4
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.1e-23 114.8 358 32.4
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.1e-23 114.8 217 33.2
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.1e-23 114.8 259 32.4
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.8e-23 114.0 128 47.7
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.8e-23 114.0 354 31.6
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 4.1e-23 112.8 167 42.5
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 4.1e-23 112.8 348 31.0
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 7.0e-23 112.1 310 31.6
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 7.0e-23 112.1 311 32.8
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.2e-22 111.3 153 38.6
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 1.6e-22 110.9 125 45.6
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.5e-22 109.8 312 30.4
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 3.5e-22 109.8 133 42.1
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 4.5e-22 109.4 117 46.2
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.3e-21 107.8 310 30.0
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.7e-21 107.5 133 42.9
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 2.2e-21 107.1 301 31.6
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 2.2e-21 107.1 301 31.6
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.8e-21 106.3 124 43.5
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.8e-21 106.3 124 44.4
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 8.5e-21 105.1 228 34.6
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 1.5e-20 104.4 297 30.3
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.9e-20 104.0 192 34.9
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 6.1e-19 99.0 213 33.8
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.0e-18 98.2 343 31.2
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.8e-18 97.4 117 47.0
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 5.7e-17 92.4 297 29.0
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 9.7e-17 91.7 131 41.2
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 8.3e-16 88.6 161 36.6
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-15 87.8 224 31.7
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.4e-15 87.8 260 32.7
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.5e-14 83.2 104 40.4
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.3e-13 81.3 103 41.7
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.7e-13 80.9 84 46.4
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.2e-13 80.5 335 29.0
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 8.0e-11 72.0 52 61.5
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 4.0e-10 69.7 103 39.8
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 5.2e-10 69.3 262 26.3
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 7.5e-09 65.5 168 29.8
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 7.5e-09 65.5 135 31.9
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.3e-08 64.7 254 26.0
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.1e-07 61.6 91 42.9
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.8e-07 60.8 81 44.4
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 1.8e-07 60.8 109 31.2
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.4e-07 60.5 122 34.4
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 2.4e-07 60.5 263 26.2
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.4e-07 60.5 120 32.5
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 3.1e-07 60.1 114 29.8
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 3.1e-07 60.1 137 32.8
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 3.1e-07 60.1 137 28.5
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 3.1e-07 60.1 126 32.5
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 4.1e-07 59.7 113 30.1
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 4.1e-07 59.7 111 31.5
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 5.4e-07 59.3 267 25.8
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 5.4e-07 59.3 124 30.6
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 7.0e-07 58.9 123 31.7
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 7.0e-07 58.9 96 38.5
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 9.1e-07 58.5 58 43.1
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.2e-06 58.2 108 33.3
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 1.2e-06 58.2 133 32.3
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 1.6e-06 57.8 137 32.1
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 1.6e-06 57.8 107 29.0
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 2.0e-06 57.4 129 33.3
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 2.7e-06 57.0 125 29.6
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 3.5e-06 56.6 118 34.7
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 3.5e-06 56.6 153 29.4
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 3.5e-06 56.6 119 31.1
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 3.5e-06 56.6 126 29.4
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 4.5e-06 56.2 153 29.4
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 4.5e-06 56.2 123 31.7
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 4.5e-06 56.2 254 25.6
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 5.9e-06 55.8 125 33.6
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 5.9e-06 55.8 142 28.9
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 5.9e-06 55.8 120 34.2
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 5.9e-06 55.8 120 31.7
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 5.9e-06 55.8 120 31.7
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 5.9e-06 55.8 120 31.7
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 7.7e-06 55.5 115 31.3
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 7.7e-06 55.5 98 32.7
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 7.7e-06 55.5 110 30.9
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 7.7e-06 55.5 152 27.0
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 7.7e-06 55.5 162 28.4


User provided reference genes

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