Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 0.0e+00 1174.5 626 100.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 7.1e-148 528.5 784 47.8
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 1.4e-143 514.2 761 49.0
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 7.3e-137 491.9 726 49.6
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 8.4e-133 478.4 716 49.3
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 4.2e-116 422.9 784 42.6
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 3.4e-110 403.3 801 41.6
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.9e-108 397.5 941 37.2
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.2e-108 396.7 634 47.2
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 9.7e-97 358.6 754 41.9
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 1.0e-93 348.6 724 40.5
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.1e-89 335.1 730 41.1
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 5.5e-84 316.2 762 38.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.7e-70 270.8 866 32.9
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 7.0e-55 219.5 219 62.6
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 6.2e-51 206.5 293 49.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.5e-46 190.7 435 40.0
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.3e-45 188.7 606 34.8
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.5e-44 184.5 469 37.1
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 5.6e-44 183.3 648 31.0
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 1.1e-42 179.1 452 36.7
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.0e-42 177.2 564 33.2
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 3.5e-38 164.1 214 54.2
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 6.0e-38 163.3 536 33.2
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 6.0e-38 163.3 537 32.8
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.3e-37 162.2 630 32.1
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 5.1e-37 160.2 669 30.0
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 6.2e-35 153.3 699 30.0
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 1.1e-34 152.5 739 28.4
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 2.4e-34 151.4 402 35.1
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.4e-33 147.5 465 33.8
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.3e-32 145.6 398 34.7
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.7e-32 145.2 682 29.6
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 3.8e-32 144.1 692 27.9
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 3.8e-32 144.1 406 35.7
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.9e-31 141.7 728 29.7
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 9.2e-31 139.4 668 30.5
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.2e-30 139.0 465 32.9
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.6e-30 138.7 405 34.6
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 7.8e-30 136.3 459 32.0
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 1.7e-29 135.2 678 29.2
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 3.9e-29 134.0 471 30.8
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 8.7e-29 132.9 401 34.4
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.5e-28 131.3 438 32.6
TPR.G25255 Trifolium pratense HOM05D003739 ORTHO05D003996 3.3e-28 131.0 156 49.4
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 7.3e-28 129.8 363 35.0
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 9.6e-28 129.4 422 31.0
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.6e-27 128.6 721 27.7
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.8e-27 127.9 313 38.3
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.4e-26 125.6 400 32.8
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.0e-25 121.7 429 33.8
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 4.4e-25 120.6 743 28.1
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.8e-25 120.2 395 32.9
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 2.2e-24 118.2 701 26.2
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.9e-24 117.9 377 32.9
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 8.4e-24 116.3 366 33.9
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.4e-23 115.5 393 32.1
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.2e-23 114.0 329 33.7
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 4.2e-23 114.0 747 26.8
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.3e-23 112.8 411 30.7
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.6e-22 112.1 406 29.3
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.6e-22 112.1 439 28.7
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 2.1e-22 111.7 567 26.5
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 4.6e-22 110.5 717 26.8
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 4.6e-22 110.5 466 31.3
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 6.0e-22 110.2 730 25.5
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.0e-21 109.4 430 30.2
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.7e-21 108.6 668 26.3
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 3.9e-21 107.5 619 26.7
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 5.1e-21 107.1 645 27.0
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.6e-21 106.7 691 26.2
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 2.5e-20 104.8 644 27.8
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 9.6e-20 102.8 694 27.4
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 9.6e-20 102.8 309 34.0
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.6e-19 102.1 405 30.6
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.1e-19 101.7 137 49.6
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 2.1e-19 101.7 216 44.4
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 3.6e-19 100.9 293 32.8
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 4.8e-19 100.5 605 26.8
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 6.2e-19 100.1 693 28.3
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 8.1e-19 99.8 280 32.1
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.8e-18 98.6 394 31.2
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.8e-18 98.6 303 32.3
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 6.9e-18 96.7 270 31.9
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 6.9e-18 96.7 602 26.6
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 9.0e-18 96.3 401 30.2
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.2e-17 95.9 338 32.2
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.5e-17 95.5 315 32.4
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 4.5e-17 94.0 386 31.1
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 2.9e-16 91.3 686 25.5
TPR.G39627 Trifolium pratense HOM05D003739 ORTHO05D003996 4.9e-16 90.5 113 54.0
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 4.9e-16 90.5 142 45.1
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.1e-15 89.4 279 29.0
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.4e-15 89.0 211 34.1
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.4e-15 89.0 301 32.2
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.2e-15 87.8 280 31.8
Glyma.20G185233 Glycine max HOM05D003739 ORTHO05D003996 9.3e-15 86.3 116 51.7
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.6e-14 85.5 404 30.7
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 3.5e-14 84.3 554 25.8
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 6.0e-14 83.6 270 31.9
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.0e-13 81.3 694 24.6
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 3.9e-13 80.9 345 30.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.9e-13 80.9 671 26.4
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.1e-12 79.3 434 27.2
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 1.9e-12 78.6 94 56.4
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.3e-11 75.9 136 40.4
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.6e-11 75.5 252 33.7
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 6.2e-11 73.6 593 26.1
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 6.2e-11 73.6 294 31.0
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-10 72.8 304 29.9
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.8e-10 72.0 374 25.9
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.8e-10 72.0 139 37.4
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.4e-10 71.6 598 25.9
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 3.1e-10 71.2 384 27.1
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 3.1e-10 71.2 163 42.3
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 6.9e-10 70.1 249 32.5
Glyma.10G205167 Glycine max HOM05D003739 ORTHO05D003996 2.0e-09 68.6 118 50.0
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.6e-09 68.2 66 54.5
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.4e-09 67.8 310 29.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.7e-08 65.5 546 25.1
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 2.9e-08 64.7 172 32.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 4.9e-08 63.9 576 24.3
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 6.4e-08 63.5 115 36.5
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.1e-07 62.8 209 26.8
TPR.G22277 Trifolium pratense HOM05D003739 ORTHO05D003996 1.1e-07 62.8 48 68.8
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.4e-07 62.4 262 27.9
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.4e-07 62.4 259 28.2
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.4e-07 62.4 503 24.9
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.9e-07 62.0 392 28.1
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.4e-07 61.6 591 24.9
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.2e-07 61.2 41 68.3
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 9.3e-07 59.7 44 61.4
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.1e-06 58.5 312 26.0
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 2.7e-06 58.2 454 25.6
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 2.7e-06 58.2 47 66.0
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 4.6e-06 57.4 69 44.9
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 7.9e-06 56.6 456 25.0
Medtr8g091840 Medicago truncatula HOM05D003739 ORTHO05D003996 7.9e-06 56.6 64 54.7


User provided reference genes

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