Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.8e-124 448.7 242 100.0
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 2.8e-108 395.6 242 86.4
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 4.7e-108 394.8 242 84.7
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 6.8e-107 391.0 242 83.5
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 9.8e-106 387.1 242 83.5
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 2.2e-105 386.0 245 83.3
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 5.4e-104 381.3 242 81.4
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 5.1e-102 374.8 247 83.8
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 6.4e-97 357.8 242 79.3
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 3.5e-95 352.1 242 77.7
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.7e-94 349.7 243 77.4
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 2.3e-94 349.4 242 75.2
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.1e-93 347.1 242 77.7
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.5e-93 346.7 243 77.4
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 4.3e-93 345.1 242 76.4
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 4.3e-93 345.1 242 76.0
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.2e-92 343.6 242 76.0
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.6e-92 343.2 244 76.6
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 2.8e-92 342.4 242 75.6
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.8e-92 342.4 242 76.9
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 4.7e-92 341.7 242 75.2
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-91 340.5 242 76.4
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 5.2e-91 338.2 242 74.8
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 6.8e-91 337.8 242 75.2
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 6.8e-91 337.8 242 75.2
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 2.0e-90 336.3 242 75.2
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.0e-90 336.3 243 74.9
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 3.4e-90 335.5 242 74.8
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.4e-90 335.5 242 75.2
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.3e-89 333.6 230 75.7
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.3e-89 333.6 241 75.1
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.7e-89 333.2 243 75.7
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.7e-89 333.2 242 71.9
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.2e-89 332.8 243 75.3
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.2e-89 332.8 243 75.3
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 2.2e-89 332.8 242 74.0
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 2.9e-89 332.4 242 74.0
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 6.4e-89 331.3 242 74.4
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 8.4e-89 330.9 279 66.7
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 8.4e-89 330.9 242 73.6
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 1.1e-88 330.5 242 73.6
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.9e-88 329.7 242 74.0
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 3.2e-88 328.9 242 73.6
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 7.1e-88 327.8 242 72.7
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 9.3e-88 327.4 227 76.2
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.6e-87 326.6 243 73.3
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 2.1e-87 326.2 245 72.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.5e-87 325.5 242 71.9
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.5e-87 325.5 243 72.8
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 6.0e-87 324.7 243 72.0
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 6.0e-87 324.7 243 72.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.0e-86 323.9 245 74.3
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.0e-86 323.9 229 73.4
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.3e-86 323.6 245 72.2
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.7e-86 323.2 242 71.9
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 3.0e-86 322.4 243 74.1
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 3.0e-86 322.4 242 71.1
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 3.0e-86 322.4 242 70.7
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 3.9e-86 322.0 242 71.9
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 6.6e-86 321.2 245 72.7
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 8.7e-86 320.9 242 71.9
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 72.8
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 1.5e-85 320.1 246 71.1
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 2.5e-85 319.3 220 76.8
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 4.3e-85 318.5 242 71.1
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.6e-85 317.4 283 65.0
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 3.6e-84 315.5 242 70.2
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 4.8e-84 315.1 243 72.4
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.8e-84 315.1 244 70.5
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 3.1e-83 312.4 242 68.6
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.9e-83 311.2 242 71.9
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 9.0e-83 310.8 242 67.4
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 1.5e-82 310.1 242 68.6
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.5e-82 310.1 242 68.6
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 2.0e-82 309.7 241 70.5
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 2.6e-82 309.3 242 68.6
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 3.4e-82 308.9 242 67.8
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 3.4e-82 308.9 242 68.2
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 3.4e-82 308.9 241 71.0
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 4.4e-82 308.5 242 68.6
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 5.8e-82 308.1 242 67.8
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.3e-81 307.0 242 68.2
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.3e-81 307.0 242 68.2
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 1.3e-81 307.0 244 70.1
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 3.8e-81 305.4 243 68.7
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 4.9e-81 305.1 244 68.9
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 4.9e-81 305.1 244 68.9
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 4.9e-81 305.1 244 69.7
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 6.4e-81 304.7 240 70.0
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 6.4e-81 304.7 244 68.9
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 6.4e-81 304.7 244 69.3
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.1e-80 303.9 242 66.9
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 3.2e-80 302.4 197 82.7
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 4.2e-80 302.0 238 68.1
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 4.2e-80 302.0 259 66.8
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 4.2e-80 302.0 291 59.1
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 5.4e-80 301.6 242 66.9
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 9.3e-80 300.8 221 72.9
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 9.3e-80 300.8 259 67.2
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.2e-79 300.4 247 66.4
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.2e-79 300.4 245 67.8
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 3.5e-79 298.9 231 69.7
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 4.6e-79 298.5 245 67.8
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 4.6e-79 298.5 232 70.7
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.6e-79 298.5 244 65.6
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 7.9e-79 297.7 244 69.7
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 7.9e-79 297.7 197 81.2
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.7e-78 296.6 223 70.9
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.9e-78 295.4 242 64.9
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 8.7e-78 294.3 197 80.2
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 4.3e-77 292.0 222 71.6
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 5.6e-77 291.6 197 78.7
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 7.3e-77 291.2 197 78.2
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 9.6e-77 290.8 175 85.1
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.8e-76 289.3 204 76.0
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 3.6e-76 288.9 244 68.0
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 6.2e-76 288.1 204 76.0
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 6.2e-76 288.1 204 76.0
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 8.1e-76 287.7 199 76.4
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 2.4e-75 286.2 245 65.7
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.3e-75 285.0 204 75.0
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 6.9e-75 284.6 197 79.2
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 7.6e-74 281.2 283 59.7
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.1e-72 277.3 283 58.3
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.9e-72 276.6 197 74.1
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 9.3e-72 274.2 245 63.7
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 6.0e-71 271.6 245 62.4
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.3e-70 270.4 197 72.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.3e-70 269.6 238 62.6
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.5e-63 245.7 179 71.5
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.9e-63 244.6 220 62.7
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.6e-60 236.9 189 65.6
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.4e-58 229.2 197 66.0
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 7.4e-53 211.5 223 55.2
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 2.2e-52 209.9 156 73.1
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 5.0e-49 198.7 134 77.6
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 2.1e-47 193.4 130 76.9
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 6.9e-43 178.3 156 62.8
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.6e-39 167.2 113 76.1
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.7e-39 166.4 166 57.2
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 7.7e-34 148.3 150 57.3
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 2.5e-32 143.3 220 40.0
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.7e-28 130.6 240 34.6
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 5.3e-27 125.6 223 41.3
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.0e-26 123.6 233 42.5
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 3.5e-26 122.9 210 36.7
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-24 117.9 238 39.9
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 2.1e-23 113.6 97 64.9
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 7.5e-21 105.1 77 71.4
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 9.8e-21 104.8 199 34.7
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 2.2e-20 103.6 214 32.7
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 5.5e-16 89.0 64 79.7
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 2.3e-14 83.6 65 69.2
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.4e-13 79.7 175 40.0
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 4.4e-13 79.3 64 65.6
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.0e-06 58.2 41 75.6
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.8e-06 57.4 40 77.5


User provided reference genes

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