Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 6396.2 3225 100.0
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 5576.5 3224 88.3
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 5557.6 3226 87.8
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 5228.7 3241 82.1
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 5226.4 3231 82.7
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 5147.4 2987 87.6
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 5123.9 3243 80.7
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 5069.2 3240 79.8
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4934.4 3246 77.8
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4932.5 3246 77.7
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 4806.1 2878 84.7
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4094.3 3269 66.0
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 4078.5 3259 65.7
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 4066.5 3273 65.8
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3967.5 3262 64.1
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3949.4 3260 63.7
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3943.7 3288 63.4
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3942.1 3292 63.5
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3937.9 3274 63.3
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3934.0 3260 63.5
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3920.9 3261 63.5
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3920.5 3260 63.3
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3918.6 3270 63.2
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3914.8 3260 63.3
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3877.4 3264 62.8
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3872.4 3267 63.0
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3870.9 3276 62.5
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3833.1 3271 62.9
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3821.2 3264 62.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3804.6 3273 62.0
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3803.8 3281 61.4
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3769.5 3321 61.3
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3764.5 3291 61.8
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3753.8 3261 61.1
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3686.0 3298 60.2
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3630.9 3255 59.8
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3588.9 3254 59.9
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3581.6 3278 57.7
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3578.1 3274 57.9
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3554.2 3389 57.8
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3549.6 3277 58.0
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3512.2 3253 59.2
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3510.7 3272 57.2
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3484.9 3291 58.2
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3413.6 3285 56.1
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3411.3 3298 56.2
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3396.3 3327 56.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3394.7 3300 56.3
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3376.3 3261 57.0
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3371.6 3267 56.1
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3364.7 3275 56.5
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3354.3 3266 56.4
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3350.1 3260 56.3
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3335.8 3264 55.8
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3332.7 3262 56.0
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3332.7 3255 56.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3331.6 3255 56.1
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3328.5 3262 56.0
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3319.3 3313 54.9
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3312.7 3257 55.7
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3306.2 3261 55.7
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3305.0 3275 55.9
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3265.3 3279 55.3
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3254.5 3132 56.4
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3238.0 3270 55.2
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3238.0 3266 54.8
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3193.3 3285 54.8
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3162.9 3260 54.4
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3157.1 3285 53.1
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3139.0 3298 52.8
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3018.0 2714 59.8
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2956.8 2447 63.3
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2950.2 3269 51.7
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2897.8 3116 52.5
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2872.8 2022 73.2
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2800.0 3011 52.4
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2605.5 3149 49.0
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2595.8 3276 46.7
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2438.7 2456 54.4
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2362.4 1600 76.0
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 2236.5 1458 79.2
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2228.4 2573 50.3
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2189.8 1694 67.2
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2144.8 1988 58.0
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2123.6 3529 39.7
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2035.8 1507 70.5
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2016.1 1468 71.0
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1980.7 2443 47.1
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1975.3 1231 80.4
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1963.3 1446 71.5
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1914.0 2456 45.6
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1911.0 2837 42.2
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1898.2 1794 58.7
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1896.3 3311 38.3
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1894.0 3289 38.2
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1793.1 3313 36.5
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1615.1 1004 82.1
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1451.4 2170 40.7
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1338.9 1135 66.5
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1309.7 1757 43.9
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1305.8 971 68.6
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1260.0 1554 48.1
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1233.4 990 65.8
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1210.7 847 72.6
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1180.6 1504 46.3
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1137.1 1544 43.1
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1134.8 836 70.3
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1124.0 983 63.2
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.2e-304 1051.6 947 60.6
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.1e-300 1036.6 852 63.1
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 5.9e-299 1032.7 3357 28.4
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.5e-265 921.8 894 54.9
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.5e-246 857.1 744 57.7
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 3.8e-245 854.0 1313 42.1
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 4.2e-204 717.6 441 81.2
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 8.0e-203 713.4 411 87.8
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 9.5e-188 663.3 829 47.2
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.3e-173 615.5 831 44.2
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 7.3e-164 583.9 574 60.1
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 8.4e-160 570.5 864 39.8
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.6e-147 529.6 658 46.2
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 8.1e-139 500.7 333 80.2
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 7.4e-132 477.6 327 72.5
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 1.1e-130 473.8 418 57.9
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 8.4e-128 464.2 822 39.2
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 8.7e-125 454.1 270 81.9
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 3.7e-123 448.7 449 52.3
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 4.2e-119 435.3 250 84.8
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 2.4e-114 419.5 531 47.3
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 5.3e-114 418.3 931 33.3
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-112 413.3 901 33.5
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 2.1e-110 406.4 810 34.7
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 7.4e-108 397.9 217 93.5
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 8.2e-107 394.4 301 66.1
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 4.2e-95 355.5 408 50.2
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-90 340.5 244 66.8
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 9.1e-90 337.8 444 40.3
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 2.7e-89 336.3 655 35.1
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 6.8e-85 321.6 851 32.7
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 5.7e-84 318.5 355 49.6
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 9.8e-84 317.8 311 56.6
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-83 317.4 246 63.8
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 2.8e-75 289.7 298 53.7
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-73 283.5 326 50.6
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.5e-71 277.3 818 28.9
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 5.4e-66 258.8 965 27.3
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-65 256.9 325 44.3
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 3.0e-64 253.1 155 78.7
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.7e-56 227.3 712 27.0
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.8e-53 217.2 391 36.6
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.2e-49 204.5 734 26.7
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 4.7e-46 192.6 193 51.8
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.3e-40 174.5 138 71.0
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 5.1e-40 172.6 146 65.8
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.8e-37 164.1 136 67.6
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 2.2e-35 157.1 117 70.1
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 4.9e-35 156.0 118 67.8
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 9.3e-34 151.8 91 83.5
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 6.2e-30 139.0 82 81.7
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 7.6e-28 132.1 70 95.7
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 7.4e-23 115.5 86 66.3
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.2e-20 108.2 109 45.9
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-19 104.8 109 52.3
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.8e-12 79.3 93 37.6
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.7e-11 77.8 163 31.3
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 1.6e-09 71.2 63 57.1
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.1e-09 70.9 58 63.8
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 2.7e-09 70.5 93 43.0
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 1.0e-08 68.6 64 53.1
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-08 68.2 45 73.3
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.5e-07 64.7 65 46.2
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 2.5e-07 63.9 107 37.4


User provided reference genes

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