Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 0.0e+00 1096.6 537 100.0
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.8e-309 1065.1 537 95.3
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 7.3e-303 1043.1 537 93.5
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 8.1e-302 1039.6 537 93.5
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.5e-292 1008.8 535 90.8
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 2.4e-290 1001.5 535 90.7
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 3.0e-288 994.6 535 89.0
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.1e-287 992.6 535 90.1
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 3.7e-286 987.6 535 89.3
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 4.8e-286 987.3 535 89.3
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 5.8e-284 980.3 537 87.7
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.2e-276 956.1 539 86.3
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 1.5e-276 955.7 535 85.4
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 5.8e-276 953.7 539 85.9
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 5.8e-276 953.7 535 84.3
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.3e-275 952.6 535 85.2
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.1e-274 949.5 534 85.4
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 5.5e-274 947.2 535 84.5
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 5.5e-274 947.2 537 83.4
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 7.1e-274 946.8 535 83.9
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 2.1e-273 945.3 535 84.5
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 4.6e-273 944.1 535 84.7
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.0e-272 943.0 535 84.9
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 2.3e-272 941.8 535 84.5
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 5.1e-272 940.6 535 83.9
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 5.1e-272 940.6 535 84.3
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-271 939.5 535 84.3
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-271 939.5 535 84.3
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.5e-271 939.1 535 84.3
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.5e-271 938.3 535 83.6
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 3.3e-271 937.9 535 83.7
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.3e-270 936.0 542 83.6
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.6e-270 935.6 535 84.3
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.2e-270 935.3 535 83.4
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 2.2e-270 935.3 535 83.2
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.2e-270 935.3 535 84.1
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 2.2e-270 935.3 535 83.6
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 83.7
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.8e-269 932.2 535 83.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 83.0
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 83.0
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 3.1e-269 931.4 536 84.0
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 3.4e-268 927.9 529 83.9
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 5.9e-268 927.2 535 83.0
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 1.0e-267 926.4 536 83.6
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 1.7e-267 925.6 535 82.8
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.2e-267 925.2 535 82.6
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 3.8e-267 924.5 536 83.0
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 5.0e-267 924.1 535 83.0
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 6.5e-267 923.7 535 83.0
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 6.5e-267 923.7 535 82.6
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 2.5e-266 921.8 535 83.0
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 5.5e-266 920.6 536 83.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.5e-266 920.6 535 82.6
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 9.4e-266 919.8 535 82.1
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.6e-265 919.1 540 81.3
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 2.1e-265 918.7 529 83.4
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 6.1e-265 917.1 529 81.7
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.0e-264 916.4 535 81.7
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.4e-264 916.0 536 82.3
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.4e-264 916.0 535 80.9
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 2.3e-264 915.2 536 81.2
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 5.1e-264 914.1 530 81.5
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 4.3e-263 911.0 535 81.7
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.3e-262 909.4 534 81.1
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.7e-262 909.1 537 81.6
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 1.7e-262 909.1 536 80.6
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 4.8e-262 907.5 535 81.1
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.2e-260 902.9 494 88.9
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 3.4e-260 901.4 536 79.7
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 5.9e-260 900.6 535 80.4
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.2e-259 898.7 535 80.9
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 2.9e-259 898.3 533 80.9
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 2.9e-259 898.3 535 80.2
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 3.8e-259 897.9 535 80.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 6.5e-259 897.1 535 80.2
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 6.5e-259 897.1 529 80.5
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 8.5e-259 896.7 535 80.0
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 8.5e-259 896.7 533 80.5
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 1.1e-258 896.3 538 79.7
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.1e-258 896.3 529 80.7
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 3.2e-258 894.8 535 78.7
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 9.4e-258 893.3 535 79.4
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 2.1e-257 892.1 536 80.4
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 3.6e-257 891.3 535 79.1
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 7.9e-257 890.2 535 79.4
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.0e-256 889.8 536 79.3
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 2.3e-256 888.6 535 79.1
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 3.0e-256 888.3 535 80.2
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 3.0e-256 888.3 536 80.2
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 5.1e-256 887.5 536 80.2
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.1e-256 887.5 536 80.6
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 8.8e-256 886.7 537 77.5
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 2.0e-255 885.6 535 79.3
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 2.6e-255 885.2 535 79.3
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 4.8e-254 880.9 528 79.5
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 6.3e-254 880.6 536 78.9
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 6.3e-254 880.6 536 78.7
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.0e-252 875.5 536 78.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 3.5e-252 874.8 531 79.5
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 1.2e-249 866.3 529 78.1
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 2.7e-249 865.1 498 84.5
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 4.7e-249 864.4 550 76.5
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 4.7e-249 864.4 682 65.7
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 6.1e-249 864.0 550 76.2
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 7.4e-247 857.1 530 77.5
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.9e-244 847.4 529 77.9
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.0e-243 846.7 528 75.6
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 3.8e-243 844.7 535 77.6
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.5e-242 840.9 493 82.4
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.1e-241 839.0 528 75.6
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 4.0e-240 834.7 666 65.3
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.9e-234 815.8 539 73.1
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.2e-228 796.6 559 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 3.6e-225 785.0 525 70.5
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.3e-222 776.5 527 69.3
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 2.9e-222 775.4 530 69.6
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.6e-220 769.6 526 69.8
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 4.7e-217 758.1 535 66.9
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 2.9e-214 748.8 536 70.9
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 9.5e-210 733.8 527 65.5
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 6.4e-206 721.1 441 80.0
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 7.8e-204 714.1 527 65.1
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.0e-203 712.2 406 82.5
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.6e-196 689.9 525 63.4
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 4.9e-190 668.3 497 65.6
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 7.1e-189 664.5 374 83.7
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.2e-183 647.1 495 67.9
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.3e-171 606.3 422 71.8
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 8.2e-161 571.2 710 49.9
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 7.0e-136 488.4 299 78.3
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.7e-132 476.5 544 49.4
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 5.0e-126 455.7 312 72.1
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 6.3e-121 438.7 537 46.9
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 7.8e-103 378.6 411 49.9
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 2.5e-101 373.6 262 70.2
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.2e-76 291.6 184 75.5
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 4.6e-71 273.1 148 89.2
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 6.2e-60 236.1 148 75.0
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 6.3e-44 183.0 133 65.4
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.5e-42 178.3 166 54.8
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 5.1e-38 163.3 104 76.0
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 7.4e-37 159.5 110 73.6
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 9.7e-37 159.1 94 78.7
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 5.0e-33 146.7 88 81.8
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.4e-19 102.1 97 57.7
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 2.5e-16 91.3 46 89.1
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 3.0e-14 84.3 49 79.6
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.5e-13 82.0 64 60.9
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 5.7e-13 80.1 45 82.2
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 6.3e-12 76.6 44 81.8
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 6.3e-12 76.6 44 81.8
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 2.0e-10 71.6 52 65.4
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 2.7e-10 71.2 49 71.4
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 3.5e-10 70.9 48 75.0
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 3.5e-10 70.9 75 61.3
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 6.1e-07 60.1 41 68.3
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 75.7
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 75.7
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 6.8e-06 56.6 201 25.4
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 8.8e-06 56.2 212 24.1


User provided reference genes

Program Settings