Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.9e-239 832.4 530 100.0
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.9e-239 832.4 530 100.0
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 4.0e-176 622.1 601 63.6
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 1.6e-153 547.0 625 55.7
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 6.9e-144 515.0 621 53.1
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 1.4e-141 507.3 594 61.6
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 3.2e-133 479.6 590 54.1
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 2.1e-132 476.9 595 65.4
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 5.6e-130 468.8 593 51.8
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 5.6e-130 468.8 592 52.4
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 1.2e-111 407.9 600 45.0
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 7.6e-111 405.2 617 40.4
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 4.2e-101 372.9 620 39.8
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 6.1e-100 369.0 595 45.0
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.4e-96 357.8 622 42.1
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 2.4e-96 357.1 612 45.4
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 2.6e-90 337.0 586 46.2
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 4.5e-87 326.2 574 42.3
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 3.8e-86 323.2 604 41.1
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 1.9e-85 320.9 592 36.5
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 6.1e-84 315.8 587 42.8
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 7.5e-82 308.9 575 43.0
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 1.7e-81 307.8 598 40.3
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 6.3e-81 305.8 618 39.8
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.2e-79 301.6 581 41.0
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 1.6e-79 301.2 632 37.7
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 2.0e-79 300.8 592 41.6
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 2.0e-79 300.8 618 34.6
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 4.2e-77 293.1 604 38.6
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 5.5e-77 292.7 608 36.3
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 4.7e-76 289.7 583 40.3
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 1.2e-74 285.0 575 41.2
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 7.5e-74 282.3 612 36.9
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 1.7e-73 281.2 592 39.0
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 1.7e-73 281.2 613 41.1
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 1.4e-72 278.1 592 39.9
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 9.1e-72 275.4 581 40.4
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 1.0e-70 271.9 565 38.6
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 2.1e-68 264.2 625 32.2
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 1.0e-67 261.9 377 42.2
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 3.0e-67 260.4 593 36.6
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 4.0e-67 260.0 595 31.8
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 1.5e-66 258.1 594 38.6
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 1.5e-66 258.1 594 38.6
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 2.0e-66 257.7 585 39.1
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 3.4e-66 256.9 590 36.6
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 5.7e-66 256.1 585 39.0
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 9.8e-66 255.4 584 39.0
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 9.8e-66 255.4 584 39.0
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 9.8e-66 255.4 597 35.0
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 1.6e-63 248.1 593 34.9
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 2.7e-63 247.3 596 36.1
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 3.5e-63 246.9 533 40.9
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 4.5e-63 246.5 588 37.1
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 4.5e-63 246.5 570 37.4
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 1.0e-62 245.4 540 38.3
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 1.3e-62 245.0 596 35.7
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 5.0e-62 243.0 591 36.0
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 8.6e-62 242.3 605 36.5
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.5e-61 241.5 250 53.2
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 6.8e-59 232.6 622 33.0
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 3.4e-58 230.3 585 37.3
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 3.4e-58 230.3 614 34.9
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 1.3e-57 228.4 589 29.5
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 2.2e-57 227.6 588 36.1
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 4.9e-57 226.5 590 36.8
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 1.4e-56 224.9 610 32.8
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 5.4e-56 223.0 587 35.8
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 1.0e-54 218.8 595 34.5
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 2.3e-54 217.6 614 34.4
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.1e-52 211.1 152 67.1
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 8.0e-52 209.1 598 34.9
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 1.4e-51 208.4 617 26.4
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 2.3e-51 207.6 611 30.6
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 1.2e-50 205.3 513 39.2
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 4.4e-50 203.4 598 34.9
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 3.2e-48 197.2 598 34.6
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 7.8e-47 192.6 622 27.5
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 3.0e-46 190.7 491 36.3
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 6.6e-46 189.5 609 30.7
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 4.3e-45 186.8 573 35.4
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 2.1e-44 184.5 572 31.8
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 6.2e-44 183.0 587 32.4
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 6.8e-43 179.5 552 27.5
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 3.4e-42 177.2 506 35.8
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 2.9e-41 174.1 599 31.4
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 6.4e-41 172.9 147 58.5
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 1.2e-39 168.7 597 27.6
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 7.8e-39 166.0 595 28.2
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 7.8e-39 166.0 583 33.8
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 6.6e-38 162.9 585 33.7
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 1.1e-37 162.2 583 31.6
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 4.3e-37 160.2 583 32.6
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 1.2e-36 158.7 110 66.4
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 1.1e-35 155.6 150 52.7
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 1.1e-35 155.6 305 32.1
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 3.4e-34 150.6 549 33.5
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 1.3e-33 148.7 306 32.7
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 2.9e-33 147.5 579 26.1
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 3.8e-33 147.1 522 33.0
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 4.9e-33 146.7 474 38.2
Hma1.2p1_0450F.1_g155520 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 8.4e-33 146.0 164 48.8
Hma1.2p1_1530F.1_g289190 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 1.1e-29 135.6 184 45.1
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 4.0e-27 127.1 593 24.1
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.2e-23 115.5 125 48.0
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 2.4e-19 101.3 116 48.3
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 2.4e-19 101.3 156 37.8
Hma1.2p1_0082F.1_g042550 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 3.8e-17 94.0 121 48.8
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 8.4e-17 92.8 131 43.5
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 3.9e-14 84.0 94 52.1
Medtr0050s0150 Medicago truncatula HOM05D006572 ORTHO05D008181 1.5e-10 72.0 104 51.9
Actinidia27580 Actinidia chinensis HOM05D006572 ORTHO05D008181 2.9e-09 67.8 88 42.0
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 6.4e-09 66.6 48 70.8
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 1.9e-08 65.1 48 68.8
Cpa.g.sc79.39 Carica papaya HOM05D006572 ORTHO05D008181 1.2e-07 62.4 73 46.6
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 2.1e-07 61.6 89 37.1


User provided reference genes

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