Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 2.6e-92 342.0 175 100.0
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 4.0e-56 221.9 179 70.9
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 2.6e-47 192.6 179 66.5
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 1.7e-38 163.3 168 61.3
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 2.4e-37 159.5 179 57.5
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 5.9e-36 154.8 168 57.1
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 2.9e-35 152.5 174 55.7
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.1e-34 150.6 173 57.2
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 8.0e-33 144.4 166 59.6
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 1.0e-32 144.1 172 59.3
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.4e-32 143.7 189 55.0
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 2.4e-29 132.9 174 54.6
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 1.0e-27 127.5 175 55.4
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 3.9e-27 125.6 175 53.1
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.1e-24 117.5 165 54.5
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.3e-22 110.5 179 45.3
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.2e-22 109.8 176 45.5
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.1e-21 107.5 171 45.0
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 1.4e-21 107.1 174 46.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.4e-21 106.3 100 63.0
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.2e-21 105.9 185 44.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.2e-21 105.9 185 44.3
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 5.4e-21 105.1 185 44.9
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 7.1e-21 104.8 185 43.8
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 7.1e-21 104.8 168 43.5
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.2e-20 104.0 172 44.8
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.2e-20 104.0 172 44.8
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.2e-20 104.0 172 44.2
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.6e-20 103.6 176 42.6
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.7e-20 102.8 184 44.6
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 3.5e-20 102.4 176 44.9
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 3.5e-20 102.4 176 42.0
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 7.8e-20 101.3 173 43.9
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.7e-19 100.1 175 45.1
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 2.3e-19 99.8 176 42.6
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.3e-19 99.8 176 44.3
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.9e-19 99.0 180 42.2
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 3.9e-19 99.0 170 45.3
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 5.1e-19 98.6 176 44.9
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 6.6e-19 98.2 185 43.2
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 8.6e-19 97.8 170 45.9
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.1e-18 97.4 167 43.7
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.9e-18 96.7 165 42.4
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.9e-18 96.7 165 42.4
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.5e-18 96.3 158 41.8
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 2.5e-18 96.3 191 41.4
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.3e-18 95.9 189 42.9
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 3.3e-18 95.9 167 44.3
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 3.3e-18 95.9 165 42.4
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.3e-18 95.5 189 42.9
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 4.3e-18 95.5 189 40.2
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 4.3e-18 95.5 167 41.3
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 5.6e-18 95.1 166 45.2
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.3e-18 94.7 176 43.8
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.6e-17 93.6 172 41.9
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.6e-17 93.6 176 43.2
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 2.1e-17 93.2 185 41.1
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 2.1e-17 93.2 173 42.8
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 2.8e-17 92.8 180 41.7
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 2.8e-17 92.8 180 41.7
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 2.8e-17 92.8 163 44.8
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 8.1e-17 91.3 180 41.1
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.4e-16 90.5 171 37.4
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.8e-16 90.1 188 41.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.8e-16 90.1 174 41.4
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 2.3e-16 89.7 170 37.1
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 3.1e-16 89.4 170 38.2
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.1e-16 89.4 176 40.3
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.0e-16 89.0 171 45.0
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 5.2e-16 88.6 177 42.4
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 6.8e-16 88.2 174 37.9
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 6.8e-16 88.2 170 37.6
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 6.8e-16 88.2 170 37.6
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.8e-16 88.2 176 42.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 6.8e-16 88.2 176 42.0
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 8.9e-16 87.8 163 38.0
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.5e-15 87.0 176 37.5
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 4.4e-15 85.5 170 40.0
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 4.4e-15 85.5 164 40.2
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 4.4e-15 85.5 165 40.0
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 5.8e-15 85.1 165 44.8
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 7.6e-15 84.7 174 38.5
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.3e-14 84.0 168 41.7
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.7e-14 83.6 171 37.4
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 1.7e-14 83.6 183 35.0
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.7e-14 83.6 170 40.0
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 2.9e-14 82.8 155 42.6
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 3.7e-14 82.4 160 40.6
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.9e-14 82.0 115 48.7
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 6.4e-14 81.6 157 40.8
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 8.4e-14 81.3 182 40.1
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 8.4e-14 81.3 163 41.1
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.1e-13 80.9 164 36.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.9e-13 80.1 171 39.8
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.9e-13 80.1 179 40.2
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.9e-13 80.1 168 38.7
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.9e-13 80.1 164 38.4
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.4e-13 79.7 160 41.9
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.4e-13 79.7 160 41.9
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.4e-13 79.7 166 39.8
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.1e-13 79.0 168 35.7
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 5.4e-13 78.6 174 38.5
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.2e-13 77.8 169 40.8
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.2e-13 77.8 169 40.8
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 9.2e-13 77.8 183 38.8
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.6e-12 77.0 160 37.5
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 2.1e-12 76.6 163 39.9
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 2.7e-12 76.3 168 35.7
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.3e-11 73.9 163 36.8
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.3e-11 73.2 171 33.3
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 5.1e-11 72.0 158 38.6
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 6.6e-11 71.6 159 38.4
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 8.6e-11 71.2 172 36.6
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.9e-10 70.1 151 40.4
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.5e-10 69.7 168 36.9
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 2.5e-10 69.7 186 38.7
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-09 67.4 169 34.9
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-09 67.4 169 34.9
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.1e-09 66.6 177 37.3
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.2e-09 65.1 75 49.3
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 8.1e-09 64.7 169 33.1
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.8e-08 63.5 88 50.0
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.0e-07 60.1 108 42.6
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.6e-07 59.7 167 37.1
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 5.8e-07 58.5 183 32.2
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 7.6e-07 58.2 188 31.4
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 9.9e-07 57.8 160 34.4


User provided reference genes

Program Settings