Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 9.7e-101 370.2 188 100.0
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 9.1e-75 283.9 187 81.3
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 2.5e-72 275.8 176 84.1
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 8.0e-71 270.8 177 84.2
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 1.4e-62 243.4 174 73.6
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 4.0e-62 241.9 179 75.4
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 5.7e-61 238.0 174 73.6
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 5.4e-59 231.5 184 68.5
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 7.0e-59 231.1 180 70.0
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 1.1e-56 223.8 180 67.2
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 3.3e-56 222.2 156 75.0
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 1.2e-55 220.3 157 72.6
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 2.1e-55 219.5 151 74.8
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 3.6e-55 218.8 157 72.0
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 6.1e-55 218.0 157 72.0
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 8.0e-55 217.6 167 70.1
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 4.0e-54 215.3 151 72.8
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 3.4e-53 212.2 163 68.1
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 7.5e-53 211.1 152 72.4
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 1.3e-52 210.3 138 76.1
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.3e-52 210.3 204 56.9
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 2.2e-52 209.5 125 84.8
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 3.7e-52 208.8 178 65.2
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 4.9e-52 208.4 138 75.4
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 6.4e-52 208.0 186 64.0
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.1e-51 207.2 141 75.2
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.1e-51 207.2 141 75.2
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 1.8e-51 206.5 186 61.8
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 2.4e-51 206.1 188 63.3
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 2.4e-51 206.1 133 78.2
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 3.2e-51 205.7 179 64.2
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 4.1e-51 205.3 136 77.9
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 5.4e-51 204.9 152 70.4
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 7.0e-51 204.5 158 69.6
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 9.2e-51 204.1 134 76.1
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 1.6e-50 203.4 143 74.1
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 2.7e-50 202.6 144 71.5
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 2.7e-50 202.6 175 66.9
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 3.5e-50 202.2 178 61.8
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 4.6e-50 201.8 168 66.1
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 7.8e-50 201.1 157 68.2
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 1.3e-49 200.3 164 66.5
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.3e-49 200.3 136 75.7
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.7e-49 199.9 177 65.5
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 2.3e-49 199.5 134 76.1
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 2.3e-49 199.5 134 76.9
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 3.0e-49 199.1 123 82.1
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 5.0e-49 198.4 152 68.4
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 5.0e-49 198.4 136 75.0
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 6.6e-49 198.0 145 71.7
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 8.6e-49 197.6 136 75.0
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 1.1e-48 197.2 185 58.9
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 1.9e-48 196.4 181 59.7
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.9e-48 196.4 167 66.5
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.5e-48 196.1 122 82.0
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 3.3e-48 195.7 136 76.5
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 9.5e-48 194.1 147 68.0
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 1.2e-47 193.7 129 76.7
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 1.2e-47 193.7 126 77.8
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 2.8e-47 192.6 157 65.0
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 2.8e-47 192.6 123 78.0
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 3.6e-47 192.2 124 75.8
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 3.6e-47 192.2 173 63.0
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 3.6e-47 192.2 143 70.6
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 4.7e-47 191.8 135 72.6
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 6.2e-47 191.4 140 71.4
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.1e-46 190.7 182 61.5
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 2.3e-46 189.5 138 68.8
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 2.3e-46 189.5 151 66.9
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 4.0e-46 188.7 172 61.0
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 5.2e-46 188.3 152 66.4
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 6.8e-46 188.0 180 58.3
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 8.9e-46 187.6 178 62.9
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 8.9e-46 187.6 181 62.4
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 8.9e-46 187.6 155 64.5
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 1.5e-45 186.8 147 68.7
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 2.0e-45 186.4 163 62.6
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 2.0e-45 186.4 201 53.2
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 7.5e-45 184.5 136 71.3
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 1.7e-44 183.3 176 59.1
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.2e-44 183.0 128 75.8
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.9e-44 182.6 128 75.8
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 2.9e-44 182.6 164 60.4
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.7e-44 182.2 174 59.2
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 3.7e-44 182.2 149 66.4
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 4.9e-44 181.8 142 66.9
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.9e-44 181.8 186 57.5
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.4e-44 181.4 174 59.2
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 6.4e-44 181.4 164 59.1
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 1.9e-43 179.9 164 62.2
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.9e-43 179.9 174 58.6
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 3.2e-43 179.1 118 75.4
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 3.2e-43 179.1 118 75.4
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 5.4e-43 178.3 175 59.4
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 5.4e-43 178.3 138 70.3
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 5.4e-43 178.3 138 70.3
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 9.2e-43 177.6 164 62.2
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.6e-42 176.8 142 64.8
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 6.0e-42 174.9 164 61.6
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 3.0e-41 172.6 153 61.4
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 6.2e-39 164.9 116 68.1
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 3.1e-38 162.5 170 54.1
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 8.9e-38 161.0 149 59.1
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 1.3e-33 147.1 118 66.9
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 3.0e-33 146.0 136 63.2
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 5.6e-32 141.7 157 52.2
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 3.6e-31 139.0 85 83.5
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 2.3e-25 119.8 79 78.5
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 3.0e-25 119.4 116 59.5
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 3.0e-25 119.4 116 61.2
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 3.9e-25 119.0 117 57.3
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 4.3e-24 115.5 105 61.9
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 7.3e-24 114.8 102 63.7
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 7.3e-24 114.8 84 72.6
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 9.6e-24 114.4 62 87.1
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.2e-23 114.0 97 64.9
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 6.2e-23 111.7 133 48.9
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 1.1e-22 110.9 116 57.8
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 1.8e-22 110.2 105 58.1
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 4.9e-20 102.1 62 79.0
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 6.4e-20 101.7 109 51.4
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 7.1e-19 98.2 72 65.3
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 6.0e-18 95.1 145 42.1
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 3.9e-17 92.4 67 65.7
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 6.6e-17 91.7 61 73.8
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.5e-16 89.7 124 41.9
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 9.0e-14 81.3 83 55.4
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.0e-13 80.1 113 42.5
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 2.1e-10 70.1 61 59.0
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 3.7e-07 59.3 87 42.5
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 1.1e-06 57.8 85 42.4


User provided reference genes

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