Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.6e-106 388.3 197 100.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.2e-78 295.4 199 80.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 7.3e-75 284.3 204 75.5
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.5e-72 276.6 210 72.4
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 9.9e-72 273.9 198 73.7
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.7e-71 273.1 218 69.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.2e-71 272.7 216 69.4
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 3.2e-70 268.9 198 72.7
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.6e-69 266.5 218 67.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.3e-68 263.5 159 82.4
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.3e-68 263.5 159 82.4
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.3e-68 263.5 205 71.7
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.3e-68 262.7 159 82.4
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.5e-67 259.2 204 68.1
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 7.3e-67 257.7 161 79.5
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.6e-67 257.3 190 71.6
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.6e-66 256.5 194 70.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.6e-66 255.4 203 68.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.2e-66 254.6 200 69.0
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 8.1e-66 254.2 180 73.3
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.1e-66 254.2 200 68.0
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 8.1e-66 254.2 158 79.1
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.4e-65 253.4 203 67.5
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.8e-65 253.1 201 68.2
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.1e-65 252.3 193 67.4
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.5e-64 250.0 199 68.8
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.5e-64 250.0 160 76.9
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.5e-64 250.0 194 68.6
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.6e-64 249.2 186 68.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 3.4e-64 248.8 204 65.7
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.4e-64 248.8 220 62.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 4.4e-64 248.4 194 68.0
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 4.4e-64 248.4 154 78.6
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 5.8e-64 248.1 163 74.8
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.8e-64 248.1 207 66.2
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 5.8e-64 248.1 213 66.2
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 5.8e-64 248.1 199 66.3
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 5.8e-64 248.1 199 66.3
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 7.6e-64 247.7 159 78.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-63 246.9 189 68.3
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.3e-63 246.9 154 77.3
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-63 246.5 159 74.8
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.7e-63 246.5 159 74.8
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.7e-63 246.5 159 74.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.2e-63 246.1 203 64.5
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.2e-63 246.1 194 67.0
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.2e-63 246.1 207 65.7
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.2e-63 246.1 176 72.7
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 2.9e-63 245.7 196 67.9
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.8e-63 245.4 196 67.9
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 3.8e-63 245.4 157 76.4
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 3.8e-63 245.4 159 74.8
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 3.8e-63 245.4 162 76.5
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 4.9e-63 245.0 151 78.1
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 4.9e-63 245.0 151 78.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 4.9e-63 245.0 151 78.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.9e-63 245.0 151 78.1
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 4.9e-63 245.0 151 78.1
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.9e-63 245.0 218 64.7
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 4.9e-63 245.0 162 75.9
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.9e-63 245.0 154 80.5
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 4.9e-63 245.0 213 65.3
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 6.4e-63 244.6 199 65.3
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.4e-63 244.2 154 79.9
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.1e-62 243.8 203 63.5
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.1e-62 243.8 212 66.0
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-62 243.8 154 79.9
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.4e-62 243.4 159 73.0
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.9e-62 243.0 197 65.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.9e-62 243.0 163 73.0
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.2e-62 242.3 164 75.6
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.2e-62 242.3 216 64.4
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.4e-62 241.5 192 68.2
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 5.4e-62 241.5 189 69.3
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.4e-62 241.5 189 69.3
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.4e-62 241.5 189 69.3
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 7.1e-62 241.1 177 67.8
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.6e-61 240.0 168 74.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.6e-61 240.0 191 67.5
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.6e-61 240.0 204 64.7
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 2.7e-61 239.2 206 65.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.7e-61 239.2 157 75.8
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.5e-61 238.8 210 65.2
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.0e-61 238.0 179 70.4
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.0e-61 238.0 179 70.4
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.0e-60 237.3 214 61.7
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-60 236.9 190 68.4
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.7e-60 236.5 154 73.4
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.3e-60 236.1 217 61.8
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.3e-60 236.1 196 67.9
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.9e-60 235.3 214 62.1
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 5.1e-60 235.0 214 61.7
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 5.1e-60 235.0 208 63.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.1e-60 235.0 192 66.1
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.5e-59 233.4 208 63.0
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 4.3e-59 231.9 194 63.4
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.6e-59 231.5 188 68.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 9.6e-59 230.7 217 60.4
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.4e-57 226.9 210 58.1
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 5.3e-57 224.9 139 77.7
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.2e-56 223.8 202 62.9
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.0e-56 223.0 152 75.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 5.8e-56 221.5 211 58.8
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 7.6e-56 221.1 191 61.8
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 7.6e-56 221.1 208 60.6
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.7e-55 219.9 200 61.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 3.2e-54 215.7 211 59.2
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.3e-54 214.2 199 60.8
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 9.3e-54 214.2 122 84.4
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.7e-53 212.6 153 71.9
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 7.9e-53 211.1 188 61.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.3e-52 210.3 295 45.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 2.3e-52 209.5 197 58.9
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 9.6e-51 204.1 146 70.5
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 2.1e-50 203.0 125 76.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 4.8e-50 201.8 211 55.5
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 4.8e-50 201.8 207 58.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.3e-49 198.4 206 54.9
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.3e-49 198.4 206 54.9
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.2e-47 193.0 155 63.2
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.9e-47 191.8 196 54.1
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.4e-46 190.3 157 61.8
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.8e-44 183.3 102 88.2
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 3.0e-44 182.6 120 74.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 6.7e-44 181.4 137 67.2
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.5e-43 179.5 213 50.7
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.5e-40 170.2 159 61.0
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-35 154.1 93 77.4
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.8e-34 149.4 113 60.2
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.1e-33 147.5 210 47.6
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.4e-33 146.4 198 44.4
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.5e-32 143.7 115 57.4
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 5.9e-32 141.7 81 85.2
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 7.7e-32 141.4 193 42.0
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 2.2e-31 139.8 129 52.7
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.8e-31 139.0 106 56.6
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 8.5e-31 137.9 193 45.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.3e-26 121.7 80 73.8
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-25 120.2 67 83.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-25 120.2 67 83.6
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.5e-22 109.8 132 53.0
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 5.1e-20 102.1 89 61.8
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 8.8e-20 101.3 71 70.4
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-13 79.7 50 72.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.8e-12 77.0 162 35.8
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 3.2e-06 56.2 38 68.4
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 9.4e-06 54.7 63 52.4


User provided reference genes

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