Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 7.4e-135 483.8 231 100.0
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 2.4e-125 452.2 229 92.1
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.2e-124 449.9 229 91.7
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 2.0e-124 449.1 228 93.0
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 4.5e-124 448.0 229 92.1
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 7.6e-124 447.2 229 92.1
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.0e-123 446.8 229 91.3
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.6e-121 439.5 229 89.1
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 2.1e-121 439.1 228 90.4
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 3.6e-121 438.3 229 89.5
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 8.8e-120 433.7 228 89.0
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 3.3e-119 431.8 219 92.2
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 4.3e-119 431.4 229 86.9
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.4e-114 416.4 230 81.3
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.9e-114 416.0 230 82.6
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 3.2e-114 415.2 260 76.5
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 2.1e-113 412.5 231 80.5
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.7e-113 412.1 230 80.9
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 7.9e-113 410.6 231 81.0
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.8e-112 409.5 226 81.4
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 5.1e-112 407.9 228 80.3
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 5.1e-112 407.9 230 80.0
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 6.7e-112 407.5 228 80.3
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.5e-111 406.4 231 80.1
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.5e-111 406.4 231 80.1
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.3e-111 405.2 229 81.2
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 7.4e-111 404.1 229 80.3
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 7.4e-111 404.1 228 79.4
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 9.7e-111 403.7 228 79.8
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.3e-110 403.3 231 77.9
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.7e-110 402.9 229 80.8
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.7e-110 402.9 256 73.8
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 2.2e-110 402.5 226 80.1
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 3.7e-110 401.7 228 79.8
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 4.8e-110 401.4 228 77.6
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 6.3e-110 401.0 226 78.3
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 6.3e-110 401.0 226 78.3
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 8.2e-110 400.6 231 78.4
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 1.1e-109 400.2 231 79.7
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.8e-109 399.4 229 79.5
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.8e-109 399.4 226 78.3
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 2.4e-109 399.1 231 78.8
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 5.3e-109 397.9 228 80.3
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.3e-109 397.9 231 77.5
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.3e-109 397.9 231 77.5
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 5.3e-109 397.9 229 79.0
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.2e-108 396.7 228 76.8
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.5e-108 396.4 230 76.5
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.5e-108 396.4 230 77.0
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 1.5e-108 396.4 228 77.6
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.5e-108 396.4 228 77.6
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 2.0e-108 396.0 231 77.1
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.6e-108 395.6 229 78.2
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 2.6e-108 395.6 231 75.8
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 4.5e-108 394.8 231 76.6
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 4.5e-108 394.8 228 78.5
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 5.9e-108 394.4 228 77.2
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.7e-107 392.9 228 75.9
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.2e-107 392.5 231 77.9
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 2.9e-107 392.1 228 75.0
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.9e-107 392.1 230 75.2
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 2.9e-107 392.1 231 76.6
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.9e-107 392.1 229 76.0
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 3.8e-107 391.7 228 77.6
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 3.8e-107 391.7 228 77.6
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 1.1e-106 390.2 228 77.2
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 1.9e-106 389.4 230 74.3
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 1.9e-106 389.4 230 74.8
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.9e-106 389.4 231 76.6
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 2.5e-106 389.0 228 75.9
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.6e-105 386.3 230 73.0
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 3.6e-105 385.2 230 73.5
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 3.6e-105 385.2 228 75.9
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 1.4e-104 383.3 224 77.2
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.3e-104 382.5 228 75.4
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 3.0e-104 382.1 228 75.0
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.7e-104 380.9 230 73.5
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.7e-104 380.9 230 73.5
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 8.8e-104 380.6 226 75.7
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 8.8e-104 380.6 226 75.7
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 1.1e-103 380.2 230 73.5
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.5e-103 379.8 226 75.2
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 2.6e-103 379.0 230 72.6
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 9.7e-103 377.1 230 72.6
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 1.3e-102 376.7 230 73.0
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.3e-102 376.7 230 73.0
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.1e-101 373.6 230 71.7
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 1.5e-98 363.2 254 66.1
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 9.4e-98 360.5 255 65.1
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.6e-97 358.6 244 70.5
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 8.0e-97 357.5 225 70.2
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 1.0e-96 357.1 225 70.2
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.0e-96 357.1 225 72.0
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 2.3e-96 355.9 229 70.3
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.8e-94 348.2 226 70.8
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 4.1e-93 345.1 225 67.1
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.3e-93 344.7 231 69.7
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 9.1e-93 344.0 228 69.7
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 5.9e-92 341.3 229 69.0
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 1.7e-91 339.7 197 77.2
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 2.2e-91 339.3 261 64.8
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 8.0e-89 330.9 176 85.2
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 5.4e-85 318.2 226 66.8
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 9.1e-85 317.4 231 62.8
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.8e-83 312.0 176 79.5
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 6.1e-81 304.7 211 69.2
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.0e-80 303.9 231 63.2
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 2.3e-80 302.8 169 78.7
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 2.3e-80 302.8 218 63.3
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 3.0e-80 302.4 229 60.3
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 2.0e-79 299.7 165 81.2
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 5.7e-79 298.1 258 56.6
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.2e-76 290.4 201 69.2
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 7.8e-76 287.7 149 85.2
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 1.7e-75 286.6 228 56.6
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.6e-73 280.0 149 81.2
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 6.0e-68 261.5 169 71.6
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 2.3e-67 259.6 195 63.6
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.2e-57 227.3 187 60.4
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 1.2e-49 200.7 223 48.9
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.6e-49 200.3 247 42.9
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 6.2e-49 198.4 204 44.1
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.2e-47 194.1 120 71.7
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 5.4e-45 185.3 244 40.2
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 9.2e-45 184.5 164 56.7
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 8.7e-35 151.4 85 74.1
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 4.2e-29 132.5 80 77.5
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.3e-27 127.5 193 39.9
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 8.7e-27 124.8 119 52.1
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.0e-24 115.9 248 37.1
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.4e-15 86.3 46 87.0
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 3.2e-13 79.7 41 73.2
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.2e-09 67.0 82 42.7
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 4.1e-08 62.8 47 61.7
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 4.5e-07 59.3 44 61.4
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 5.9e-07 58.9 79 36.7


User provided reference genes

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