Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 1.6e-126 456.1 221 100.0
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.6e-57 226.9 229 60.7
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 1.3e-51 207.2 235 54.0
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 6.1e-38 161.8 235 47.2
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 8.0e-38 161.4 222 49.5
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 1.0e-37 161.0 236 49.6
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 3.0e-37 159.5 230 50.4
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 1.7e-32 143.7 232 47.0
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 2.8e-30 136.3 230 47.4
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 3.6e-30 136.0 236 44.9
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 8.3e-27 124.8 234 41.5
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.2e-26 122.9 234 41.0
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 9.2e-26 121.3 233 41.2
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.0e-25 120.2 235 42.6
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 3.5e-25 119.4 239 42.7
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 7.8e-25 118.2 234 42.3
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.3e-24 117.5 260 38.1
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.3e-24 117.5 247 38.1
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.7e-24 117.1 255 37.6
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.7e-24 117.1 252 37.3
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.7e-24 117.1 244 39.3
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 2.3e-24 116.7 215 40.0
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.3e-24 116.7 244 38.1
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 3.0e-24 116.3 249 34.5
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.9e-24 115.9 246 37.0
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 5.0e-24 115.5 224 42.0
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 5.0e-24 115.5 242 38.8
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.5e-23 114.0 235 40.9
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.5e-23 114.0 231 39.8
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.9e-23 113.6 253 37.9
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.5e-23 113.2 258 38.4
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 5.6e-23 112.1 238 39.9
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 9.5e-23 111.3 230 38.3
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.6e-22 110.5 277 36.8
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 2.1e-22 110.2 240 37.9
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.8e-22 109.8 251 37.5
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 2.8e-22 109.8 258 38.8
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 3.6e-22 109.4 241 38.2
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 4.7e-22 109.0 231 35.9
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.7e-22 109.0 256 37.9
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 4.7e-22 109.0 251 36.7
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 8.1e-22 108.2 254 35.8
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.8e-21 107.1 236 37.3
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.8e-21 107.1 256 38.3
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.3e-21 106.7 248 35.9
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 2.3e-21 106.7 252 33.3
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.1e-21 106.3 227 39.6
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 3.1e-21 106.3 227 39.6
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.0e-21 105.9 240 33.3
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 5.2e-21 105.5 241 37.8
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 6.8e-21 105.1 227 39.6
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 8.9e-21 104.8 257 34.2
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.2e-20 104.4 227 37.9
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.2e-20 104.4 276 35.5
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.5e-20 104.0 252 36.5
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 2.0e-20 103.6 258 34.9
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 2.0e-20 103.6 235 35.3
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 2.6e-20 103.2 243 35.8
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 3.4e-20 102.8 248 37.1
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.4e-20 102.8 242 33.1
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 5.8e-20 102.1 273 35.9
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 5.8e-20 102.1 242 38.0
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 9.8e-20 101.3 238 35.7
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.3e-19 100.9 254 36.6
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.7e-19 100.5 233 36.1
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 3.7e-19 99.4 240 35.8
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 6.4e-19 98.6 256 38.3
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 6.4e-19 98.6 250 35.2
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 8.3e-19 98.2 213 38.5
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.1e-18 97.8 245 37.1
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.9e-18 97.1 236 35.6
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.9e-18 97.1 234 34.2
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 4.1e-18 95.9 242 37.6
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 4.1e-18 95.9 243 35.8
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 7.1e-18 95.1 228 32.9
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 7.1e-18 95.1 252 33.7
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 9.2e-18 94.7 228 32.9
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-17 94.4 242 34.7
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 1.6e-17 94.0 238 36.6
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 2.1e-17 93.6 219 33.3
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 3.5e-17 92.8 259 34.7
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 4.6e-17 92.4 234 33.8
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 6.0e-17 92.0 256 32.8
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 7.8e-17 91.7 250 35.2
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.3e-16 90.9 243 35.0
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.3e-16 90.9 241 31.1
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.3e-16 90.9 231 33.8
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 1.7e-16 90.5 252 33.7
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 2.3e-16 90.1 253 32.8
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 2.3e-16 90.1 219 36.5
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 3.0e-16 89.7 237 32.9
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.9e-16 89.4 251 32.3
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 5.1e-16 89.0 256 30.1
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 6.6e-16 88.6 236 32.2
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 6.6e-16 88.6 248 35.9
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 8.6e-16 88.2 232 37.5
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.1e-15 87.8 218 34.9
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.9e-15 87.0 251 35.1
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.3e-15 85.9 239 29.3
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.6e-15 85.5 242 34.7
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.6e-14 84.0 220 35.0
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 4.7e-14 82.4 251 32.7
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 3.1e-13 79.7 229 35.8
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 3.1e-13 79.7 195 37.4
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.1e-13 79.7 253 32.4
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 4.0e-13 79.3 218 29.8
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 6.8e-13 78.6 224 32.1
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 8.9e-13 78.2 256 31.6
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.2e-12 77.8 224 32.1
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.0e-12 77.0 194 33.0
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 2.6e-12 76.6 225 35.1
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 4.4e-12 75.9 251 32.3
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.9e-11 73.2 219 35.2
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 3.8e-11 72.8 221 35.3
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 6.4e-11 72.0 220 30.0
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.9e-10 70.5 251 32.3
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 7.1e-10 68.6 223 28.7
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 7.1e-10 68.6 223 28.7
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 7.1e-10 68.6 223 28.7
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 6.0e-09 65.5 230 30.4
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 8.6e-08 61.6 238 29.4
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 1.1e-07 61.2 224 29.5
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-07 60.5 109 36.7
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 3.3e-07 59.7 125 36.0
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 5.6e-07 58.9 141 33.3
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-06 57.8 109 34.9
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.6e-06 57.4 109 35.8
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 4.7e-06 55.8 95 43.2
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 4.7e-06 55.8 246 30.5
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 6.2e-06 55.5 106 34.0
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 6.2e-06 55.5 109 33.9
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 6.2e-06 55.5 232 28.4


User provided reference genes

Program Settings