Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 8.7e-148 527.3 346 100.0
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 8.7e-148 527.3 346 100.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.5e-115 420.2 327 81.0
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 7.5e-107 391.3 325 73.5
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.6e-104 383.6 325 76.9
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.2e-103 379.8 325 81.2
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.6e-101 373.6 312 77.6
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 8.8e-100 367.9 326 82.8
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 2.2e-98 363.2 325 72.3
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.0e-95 354.4 311 78.8
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 2.3e-95 353.2 326 71.2
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 2.9e-95 352.8 316 73.4
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 5.0e-95 352.1 315 76.2
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 6.6e-95 351.7 332 74.7
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 3.0e-92 342.8 332 74.1
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 4.0e-92 342.4 322 68.6
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 6.3e-90 335.1 315 69.5
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 8.6e-87 324.7 331 71.0
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 3.3e-86 322.8 315 72.4
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 4.3e-86 322.4 315 68.6
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 9.5e-86 321.2 309 69.6
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.2e-85 320.9 313 66.5
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.1e-85 320.1 325 66.2
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.4e-84 317.4 315 69.2
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.8e-84 317.0 316 67.1
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 6.8e-84 315.1 316 66.8
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 8.9e-84 314.7 317 65.9
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.0e-83 313.5 315 67.0
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 3.4e-83 312.8 315 66.7
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 4.4e-83 312.4 317 66.2
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 5.8e-83 312.0 315 66.7
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 7.5e-83 311.6 313 69.6
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 7.5e-83 311.6 315 69.5
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 9.8e-83 311.2 320 67.2
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-82 310.8 315 66.7
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 2.2e-82 310.1 317 65.6
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 4.9e-82 308.9 315 66.0
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 1.4e-81 307.4 315 65.4
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-81 307.4 315 66.0
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-81 307.4 315 66.0
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 4.1e-81 305.8 357 53.8
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 3.5e-80 302.8 315 65.7
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 3.5e-80 302.8 309 66.0
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 4.6e-80 302.4 320 66.2
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 3.9e-79 299.3 316 64.6
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.1e-78 297.7 300 68.0
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.9e-78 297.0 324 62.3
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.9e-78 297.0 324 62.3
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.3e-78 296.2 316 63.9
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 3.3e-78 296.2 313 62.6
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.6e-77 293.9 313 64.2
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.1e-77 293.5 311 67.8
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.8e-77 293.1 316 66.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 3.6e-77 292.7 320 65.9
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 6.2e-77 292.0 319 59.9
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 5.2e-76 288.9 314 65.3
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 6.8e-76 288.5 323 65.0
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 8.9e-76 288.1 328 65.2
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.6e-75 286.6 360 56.1
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 2.6e-75 286.6 317 64.0
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.7e-74 283.9 319 62.1
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 2.2e-74 283.5 328 62.8
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.9e-74 283.1 313 64.5
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 6.4e-74 282.0 326 63.8
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 8.3e-74 281.6 316 64.9
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.1e-73 281.2 315 66.7
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.4e-73 280.8 326 62.6
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.9e-73 280.4 328 62.5
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 2.4e-73 280.0 315 63.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 4.1e-73 279.3 292 66.8
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 4.1e-73 279.3 311 67.2
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 9.2e-73 278.1 316 63.3
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 9.2e-73 278.1 316 63.9
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-72 277.3 316 62.7
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.1e-72 276.9 289 68.9
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.1e-72 276.9 313 63.3
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.1e-72 276.9 313 63.3
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.1e-72 276.9 326 63.2
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.1e-72 276.9 313 64.2
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.7e-72 276.6 323 63.5
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 3.5e-72 276.2 327 62.1
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.6e-72 275.8 316 62.3
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.6e-72 275.8 316 63.3
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 3.9e-71 272.7 329 61.4
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 6.6e-71 271.9 315 61.6
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 8.6e-71 271.6 315 61.3
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 8.6e-71 271.6 277 69.3
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 8.6e-71 271.6 316 62.3
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 2.5e-70 270.0 316 62.7
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 3.6e-69 266.2 320 60.6
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 4.7e-69 265.8 318 63.2
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.7e-69 265.8 316 62.7
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 4.7e-69 265.8 316 60.8
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 6.2e-69 265.4 329 61.4
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.1e-68 264.6 315 60.0
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.3e-68 263.5 309 64.7
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 3.4e-67 259.6 315 60.0
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 7.5e-67 258.5 292 65.8
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.3e-66 257.7 316 60.8
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-66 256.5 213 66.2
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 4.9e-66 255.8 309 58.9
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 8.3e-66 255.0 317 60.9
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.1e-65 254.6 293 64.8
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-65 254.2 231 62.8
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 9.2e-65 251.5 291 64.3
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 7.8e-64 248.4 301 61.8
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 7.8e-64 248.4 307 60.3
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 3.0e-63 246.5 232 62.5
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.9e-62 243.8 313 59.1
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 9.5e-62 241.5 289 61.2
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.2e-61 241.1 291 63.6
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.8e-61 240.0 302 62.3
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.7e-58 230.7 307 59.3
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 3.8e-58 229.6 228 58.8
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.3e-55 221.1 297 62.3
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 8.7e-55 218.4 181 67.4
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 8.7e-55 218.4 309 55.7
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.1e-54 218.0 290 58.3
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 8.1e-53 211.8 192 57.8
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-52 211.5 192 57.8
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.3e-52 209.1 310 52.3
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 7.6e-51 205.3 309 54.7
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-50 204.1 161 65.2
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 5.4e-49 199.1 191 61.3
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 9.3e-49 198.4 228 56.1
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 2.7e-48 196.8 181 63.0
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 4.6e-48 196.1 148 71.6
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 8.7e-47 191.8 158 65.2
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 3.3e-46 189.9 190 56.8
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 4.3e-46 189.5 193 55.4
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-45 187.6 181 61.3
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 4.8e-45 186.0 313 49.8
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.4e-44 184.5 152 63.2
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.4e-44 183.7 310 48.7
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 7.6e-43 178.7 192 52.6
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.4e-41 174.5 231 68.0
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 9.3e-41 171.8 322 49.1
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 1.6e-40 171.0 212 67.9
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.0e-39 168.3 168 56.5
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-36 158.3 153 55.6
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 3.1e-36 156.8 308 48.4
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.2e-34 150.6 163 54.0
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 2.9e-34 150.2 308 46.1
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.8e-34 149.8 180 71.1
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.4e-33 147.9 153 58.8
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 3.2e-33 146.7 147 57.1
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.6e-32 144.4 123 63.4
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 3.3e-30 136.7 130 58.5
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 4.8e-29 132.9 123 56.9
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 2.1e-24 117.5 163 47.9
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 6.1e-16 89.4 93 53.8
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 1.8e-15 87.8 54 74.1
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 2.3e-15 87.4 281 29.5
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.7e-14 82.0 159 40.3
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 3.7e-13 80.1 93 46.2
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.7e-13 80.1 84 52.4
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.7e-13 80.1 84 52.4
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-12 78.6 96 49.0
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-12 77.8 49 71.4
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-12 77.4 58 58.6
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-09 68.6 89 47.2
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.2e-09 67.0 83 48.2
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 3.6e-08 63.5 47 63.8
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 6.1e-08 62.8 67 52.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.3e-07 60.8 67 50.7


User provided reference genes

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