Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 6.1e-288 993.4 491 100.0
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 1.3e-250 869.4 487 86.9
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 2.3e-250 868.6 426 100.0
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 3.1e-247 858.2 488 85.0
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 5.6e-241 837.4 489 84.3
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 2.4e-231 805.4 488 80.3
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 4.9e-229 797.7 489 79.3
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 2.4e-228 795.4 488 79.7
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 4.4e-222 774.6 488 77.3
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 2.9e-213 745.3 485 73.8
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 6.7e-202 707.6 485 71.8
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 8.2e-200 700.7 485 71.3
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 4.4e-177 625.2 494 62.6
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 4.8e-176 621.7 494 63.4
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 7.0e-175 617.8 491 62.1
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 9.1e-175 617.5 442 66.7
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.1e-172 610.5 494 61.7
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 4.2e-172 608.6 492 62.4
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 5.5e-172 608.2 454 64.8
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 9.4e-172 607.4 491 62.7
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 1.8e-170 603.2 458 64.8
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 2.3e-170 602.8 473 63.0
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 5.2e-170 601.7 489 62.0
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.6e-169 599.4 481 62.6
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.8e-168 595.9 491 61.1
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 3.7e-168 595.5 477 61.6
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 6.3e-168 594.7 428 67.1
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 8.2e-168 594.3 476 60.5
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 1.1e-167 594.0 481 62.4
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 1.1e-167 594.0 488 60.9
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.1e-167 592.4 484 61.4
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 9.1e-167 590.9 485 59.8
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 2.6e-166 589.3 485 57.9
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 2.6e-166 589.3 490 60.6
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 4.5e-166 588.6 490 60.6
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 4.5e-166 588.6 478 60.0
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 1.7e-165 586.6 494 59.3
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 5.0e-165 585.1 486 59.1
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 8.5e-165 584.3 484 59.7
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.1e-164 583.9 487 58.7
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.1e-164 583.9 490 60.2
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.2e-164 582.4 490 60.0
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 4.2e-164 582.0 483 58.2
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.2e-164 582.0 494 58.9
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 7.2e-164 581.3 485 58.6
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 1.2e-163 580.5 481 59.0
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 3.6e-163 578.9 441 63.5
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 4.7e-163 578.6 443 62.3
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.0e-162 577.4 490 60.0
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 2.6e-161 572.8 482 59.1
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 2.6e-161 572.8 482 59.1
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 3.4e-161 572.4 495 56.6
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 4.4e-161 572.0 405 67.4
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.7e-160 570.1 539 54.2
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 1.1e-159 567.4 482 58.7
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 5.3e-159 565.1 482 58.5
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 7.0e-159 564.7 482 58.7
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 1.2e-158 563.9 480 59.6
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 2.7e-158 562.8 485 58.1
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 7.7e-158 561.2 430 62.3
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.2e-157 559.7 482 59.1
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 2.2e-157 559.7 484 59.1
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 8.5e-157 557.8 484 58.3
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 1.1e-156 557.4 495 57.0
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 1.1e-156 557.4 486 57.4
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 1.5e-156 557.0 485 57.1
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.9e-156 556.6 479 57.8
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 1.9e-156 556.6 470 56.6
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 5.5e-156 555.1 478 57.5
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 7.2e-156 554.7 485 56.7
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 9.4e-156 554.3 490 58.4
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 2.1e-155 553.1 428 62.9
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 4.4e-153 545.4 483 56.9
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 5.7e-153 545.0 483 56.5
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 1.3e-152 543.9 481 57.2
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 1.6e-150 537.0 468 57.5
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 3.5e-150 535.8 483 54.5
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 1.0e-149 534.3 468 57.1
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 1.3e-149 533.9 493 55.0
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 3.8e-149 532.3 482 56.8
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 1.1e-148 530.8 488 54.1
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 1.1e-148 530.8 489 54.6
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 1.8e-146 523.5 424 57.1
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.8e-146 523.5 463 56.2
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 2.0e-145 520.0 496 55.0
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 9.8e-145 517.7 479 54.1
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 7.0e-143 511.5 494 53.2
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.3e-141 507.3 401 61.1
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 2.5e-140 503.1 490 51.8
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 5.6e-140 501.9 400 59.0
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 8.0e-139 498.0 496 51.6
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 1.0e-138 497.7 491 51.7
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 3.1e-138 496.1 504 52.0
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 3.1e-138 496.1 400 58.2
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 6.8e-138 495.0 492 51.4
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 6.8e-138 495.0 481 52.2
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.5e-137 493.8 417 58.0
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 9.8e-137 491.1 498 50.0
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 3.0e-133 479.6 411 57.4
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 3.0e-133 479.6 437 54.9
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 9.5e-132 474.6 376 62.2
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 3.6e-131 472.6 458 51.7
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 2.3e-122 443.4 353 61.8
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 6.8e-122 441.8 347 61.1
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 7.6e-121 438.3 347 59.1
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 6.4e-120 435.3 353 61.2
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.5e-118 429.5 345 62.0
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 2.0e-105 387.1 422 52.1
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 6.4e-104 382.1 283 65.0
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.3e-91 341.3 454 42.3
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 5.1e-85 319.3 423 41.6
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 1.6e-83 314.3 245 62.9
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 4.8e-83 312.8 405 43.7
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 8.4e-80 302.0 183 77.0
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.2e-78 298.1 308 51.3
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 6.5e-72 275.8 213 64.3
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 3.2e-71 273.5 203 65.0
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.3e-67 261.5 481 36.6
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 6.3e-67 259.2 234 56.0
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 6.7e-61 239.2 169 71.6
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 3.7e-51 206.8 335 38.2
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.1e-47 195.3 505 29.9
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.8e-45 188.0 168 56.0
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.0e-40 172.2 195 48.7
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 8.3e-35 152.5 273 37.7
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 5.9e-33 146.4 236 35.6
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 9.5e-31 139.0 336 30.1
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.9e-25 119.8 110 55.5
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.3e-24 118.6 113 53.1
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 6.6e-24 116.3 113 52.2
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.6e-20 104.4 110 48.2
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 1.3e-19 102.1 76 60.5
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 8.3e-19 99.4 76 55.3
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 9.8e-12 75.9 93 46.2
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 2.2e-11 74.7 79 45.6


User provided reference genes

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