Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.1e-160 570.1 321 100.0
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 5.4e-136 488.0 321 87.2
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.8e-132 475.7 321 85.7
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 4.5e-130 468.4 327 83.8
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.3e-126 456.1 323 84.5
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 3.0e-126 455.7 322 84.8
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 8.7e-126 454.1 323 84.2
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.3e-125 452.2 324 83.6
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.2e-121 439.5 325 79.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.9e-121 439.1 325 79.1
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 3.5e-119 432.2 283 78.8
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.4e-114 415.6 321 76.9
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.3e-113 413.7 323 77.4
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.5e-112 409.5 324 75.9
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.8e-100 369.4 328 70.4
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.7e-100 369.0 288 69.1
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.9e-98 361.7 291 67.7
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.9e-98 361.7 287 67.9
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.4e-96 357.1 326 71.2
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.0e-94 350.9 339 69.0
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 8.8e-94 347.8 326 68.1
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.1e-93 347.4 327 68.8
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.5e-93 347.1 323 66.9
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 2.6e-93 346.3 290 65.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 3.3e-93 345.9 327 68.8
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.3e-93 345.9 327 68.8
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 5.7e-93 345.1 289 67.1
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 7.4e-93 344.7 326 70.6
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 9.7e-93 344.4 331 66.8
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-92 344.0 327 68.8
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.1e-91 339.3 289 65.4
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.5e-90 335.5 327 65.1
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 3.8e-89 332.4 305 62.6
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.1e-88 330.9 335 66.3
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 9.4e-88 327.8 286 64.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.7e-87 326.2 324 64.2
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.6e-87 325.9 289 64.4
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 3.0e-86 322.8 324 65.7
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 5.7e-85 318.5 269 64.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.4e-83 313.9 325 63.1
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 3.5e-82 309.3 327 62.7
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 2.2e-81 306.6 306 58.5
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.4e-80 301.2 283 59.7
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 9.1e-75 284.6 293 57.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.1e-71 273.5 290 56.2
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 6.1e-71 271.9 282 57.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.0e-70 271.2 296 54.7
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.8e-70 270.4 287 57.5
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.6e-69 266.5 286 55.2
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.4e-69 266.2 322 59.0
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 5.7e-69 265.4 291 55.3
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 5.7e-69 265.4 330 55.8
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.2e-68 263.5 306 52.0
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.8e-68 262.3 291 52.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 8.3e-68 261.5 287 54.7
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.1e-67 261.2 291 54.0
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 5.4e-67 258.8 297 53.5
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 9.1e-67 258.1 286 53.1
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 9.1e-67 258.1 290 53.4
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 9.1e-67 258.1 288 54.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.2e-66 257.7 294 52.4
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.2e-66 257.7 280 54.3
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.6e-66 257.3 293 53.6
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 2.7e-66 256.5 302 51.7
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.7e-66 256.5 298 53.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 4.5e-66 255.8 286 52.4
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 5.9e-66 255.4 307 52.1
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.3e-65 253.4 295 52.5
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 5.0e-65 252.3 290 53.4
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.1e-64 251.1 291 52.9
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.5e-64 250.0 318 51.3
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.5e-64 250.0 318 51.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.5e-64 250.0 287 51.2
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.3e-64 249.6 295 51.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 7.2e-64 248.4 293 52.2
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.2e-63 247.7 288 52.8
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.6e-63 247.3 288 52.1
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.6e-63 247.3 327 50.2
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.6e-63 247.3 288 52.4
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.1e-63 246.9 296 53.0
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 8.0e-63 245.0 295 50.5
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.0e-63 245.0 288 52.4
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 3.0e-62 243.0 302 51.7
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 8.9e-62 241.5 292 49.7
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.5e-61 240.7 288 51.4
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 4.4e-61 239.2 291 50.9
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 5.7e-61 238.8 283 50.9
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.7e-61 238.8 243 57.2
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 7.5e-61 238.4 284 51.4
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.7e-60 237.3 285 49.8
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.7e-60 237.3 281 51.6
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.8e-60 236.5 291 51.5
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 6.3e-60 235.3 288 51.4
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 8.3e-60 235.0 312 49.0
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 8.3e-60 235.0 302 50.0
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.1e-59 234.6 292 51.4
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.4e-59 233.4 248 55.2
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 4.1e-59 232.6 302 50.7
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 9.2e-59 231.5 286 51.0
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 9.2e-59 231.5 281 49.1
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.2e-58 231.1 286 51.4
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.5e-58 229.6 309 48.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 5.9e-58 228.8 292 47.6
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 5.9e-58 228.8 297 49.5
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.7e-57 227.3 306 49.3
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.3e-57 226.9 241 55.6
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 3.9e-57 226.1 296 48.0
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.3e-56 223.0 287 50.9
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.3e-56 223.0 295 49.5
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 3.3e-56 223.0 289 49.1
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.2e-55 221.1 279 49.5
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.8e-55 219.9 303 46.5
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 6.1e-55 218.8 333 42.0
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.4e-54 217.6 293 48.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.8e-54 217.2 277 49.5
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 2.2e-52 210.3 291 47.8
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.9e-51 207.2 275 48.4
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 9.2e-51 204.9 289 46.4
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 2.0e-50 203.8 306 45.8
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.7e-50 203.4 294 45.9
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 3.5e-50 203.0 293 44.4
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.3e-49 201.1 155 65.8
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.3e-49 201.1 264 49.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.0e-49 199.1 243 51.9
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.5e-48 196.8 221 52.9
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 9.5e-48 194.9 294 46.3
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 6.2e-47 192.2 166 61.4
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.1e-46 189.9 221 51.6
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.4e-45 186.0 197 51.8
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 6.4e-44 182.2 280 42.9
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.1e-43 181.4 180 56.7
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.9e-43 180.6 290 37.6
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.2e-42 177.9 294 40.8
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 6.0e-42 175.6 127 65.4
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.3e-41 174.5 292 41.4
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.3e-41 173.7 165 57.6
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.9e-41 172.9 184 50.5
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.5e-40 171.0 282 42.2
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.5e-37 161.0 285 37.2
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.5e-34 149.8 169 49.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.0e-34 149.1 126 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.7e-33 147.5 118 61.0
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.7e-33 147.5 307 38.1
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.5e-32 143.7 146 55.5
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 7.3e-32 142.1 291 38.5
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.2e-31 141.4 124 56.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.6e-31 139.8 239 43.1
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 6.2e-31 139.0 125 54.4
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.1e-30 138.3 120 57.5
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.2e-30 136.0 277 36.5
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.5e-29 134.4 77 77.9
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 8.4e-28 128.6 179 64.2
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.2e-26 124.8 167 43.1
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 7.1e-19 99.0 181 43.1
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.8e-13 79.3 56 62.5
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 9.9e-13 78.6 105 49.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.4e-11 72.8 48 64.6
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.2e-10 71.6 135 42.2
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 1.6e-10 71.2 53 71.7
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.8e-09 67.8 161 42.2
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.1e-08 65.1 104 44.2
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 1.5e-08 64.7 40 72.5
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.6e-07 61.2 112 42.9
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 9.0e-06 55.5 154 35.1


User provided reference genes

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