Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 3.7e-208 728.0 377 100.0
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 4.2e-196 688.0 378 94.7
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 6.1e-195 684.1 378 92.1
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 6.5e-189 664.1 378 90.7
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 3.6e-187 658.3 377 89.4
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 5.1e-186 654.4 378 89.2
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 6.7e-186 654.1 378 89.2
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 1.8e-183 646.0 378 88.9
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 3.5e-182 641.7 377 87.3
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 4.5e-182 641.3 377 87.8
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 2.2e-181 639.0 378 88.4
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 3.8e-181 638.3 377 87.0
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 5.0e-181 637.9 378 88.1
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 7.5e-177 624.0 369 86.7
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 1.3e-176 623.2 378 84.4
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.2e-176 622.5 377 84.4
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 2.4e-175 619.0 375 85.1
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 2.4e-175 619.0 377 83.3
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 5.3e-175 617.8 373 86.3
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 5.3e-175 617.8 369 85.4
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.6e-174 616.3 377 83.0
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 1.0e-173 613.6 348 89.1
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 1.3e-173 613.2 375 84.0
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 1.3e-173 613.2 367 86.6
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 1.5e-172 609.8 367 86.1
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 2.5e-172 609.0 376 83.5
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 3.2e-172 608.6 379 84.2
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 4.2e-172 608.2 377 82.5
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 5.5e-172 607.8 358 86.9
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 5.5e-172 607.8 366 84.2
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 5.5e-172 607.8 375 82.9
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 5.5e-172 607.8 375 82.9
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 1.2e-171 606.7 352 85.8
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.6e-171 606.3 358 86.9
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 2.7e-171 605.5 379 82.8
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 8.0e-171 604.0 363 85.1
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 8.0e-171 604.0 377 83.0
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 3.0e-170 602.1 377 82.0
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 3.0e-170 602.1 377 82.5
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 8.8e-170 600.5 377 82.0
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 1.2e-169 600.1 377 82.0
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 1.2e-169 600.1 322 95.0
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 1.5e-169 599.7 377 81.4
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 2.0e-169 599.4 377 81.2
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 4.4e-169 598.2 377 82.2
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 5.7e-169 597.8 345 87.0
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 7.5e-169 597.4 377 81.7
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 7.5e-169 597.4 377 81.2
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 7.5e-169 597.4 377 81.7
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 7.5e-169 597.4 359 85.2
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 7.5e-169 597.4 377 82.2
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 9.8e-169 597.0 377 81.2
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 9.8e-169 597.0 345 86.4
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 9.8e-169 597.0 380 81.1
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 1.7e-168 596.3 378 81.7
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 2.2e-168 595.9 377 81.2
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 2.8e-168 595.5 377 81.7
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 3.7e-168 595.1 377 81.7
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 3.7e-168 595.1 377 81.7
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 6.3e-168 594.3 379 81.0
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 6.3e-168 594.3 347 86.7
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 8.3e-168 594.0 377 80.9
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.1e-167 593.6 347 84.7
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 1.1e-167 593.6 377 80.4
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 1.4e-167 593.2 377 80.9
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 1.4e-167 593.2 379 81.3
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 1.4e-167 593.2 362 83.1
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 1.4e-167 593.2 376 82.2
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 1.8e-167 592.8 351 85.8
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.8e-167 592.8 377 81.7
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 1.8e-167 592.8 347 87.0
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 2.4e-167 592.4 351 85.2
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 3.1e-167 592.0 377 80.6
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 3.1e-167 592.0 371 81.9
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 4.1e-167 591.7 350 86.0
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 4.1e-167 591.7 356 84.6
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 5.4e-167 591.3 377 80.9
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 5.4e-167 591.3 348 85.9
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 7.0e-167 590.9 377 80.4
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 7.0e-167 590.9 351 85.5
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.0e-167 590.9 351 85.2
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.0e-167 590.9 351 85.2
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.0e-167 590.9 351 85.5
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 9.1e-167 590.5 350 84.9
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 9.1e-167 590.5 377 80.4
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 1.6e-166 589.7 347 85.9
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 2.7e-166 589.0 377 79.6
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 2.7e-166 589.0 380 80.3
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 2.7e-166 589.0 380 80.5
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 2.7e-166 589.0 387 80.4
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 5.9e-166 587.8 357 84.3
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 7.7e-166 587.4 376 81.1
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.0e-165 587.0 351 84.6
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.0e-165 587.0 374 81.6
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 1.3e-165 586.6 345 84.6
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 1.3e-165 586.6 364 84.1
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 2.2e-165 585.9 390 78.7
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 2.9e-165 585.5 347 85.6
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 6.5e-165 584.3 345 85.5
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 6.5e-165 584.3 350 84.9
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 6.5e-165 584.3 364 81.3
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 8.5e-165 583.9 380 79.5
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 8.5e-165 583.9 359 82.5
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.1e-164 583.6 377 79.8
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 1.5e-164 583.2 345 84.6
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 1.9e-164 582.8 372 80.4
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 4.2e-164 581.6 380 78.9
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 4.2e-164 581.6 350 84.6
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 2.6e-161 572.4 364 79.1
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 2.7e-158 562.4 374 77.8
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 3.5e-158 562.0 351 79.2
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 1.3e-157 560.1 366 77.3
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 2.3e-157 559.3 371 76.0
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.1e-155 552.7 401 72.8
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 5.2e-154 548.1 347 79.0
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 5.2e-154 548.1 345 79.7
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 2.6e-153 545.8 373 78.6
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 2.2e-152 542.7 350 77.4
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 2.9e-152 542.3 347 78.1
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 5.9e-150 534.6 347 79.3
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 6.2e-147 524.6 380 73.4
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 8.0e-147 524.2 342 79.8
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 2.0e-145 519.6 296 87.2
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 4.9e-144 515.0 325 80.3
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.7e-142 509.2 294 86.4
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 3.9e-141 505.4 322 81.7
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 1.4e-130 470.3 341 70.4
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 2.6e-129 466.1 347 66.6
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 5.2e-122 441.8 303 77.2
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 7.1e-119 431.4 306 71.6
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 1.2e-110 404.1 225 91.6
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 6.5e-88 328.6 188 88.3
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.6e-86 323.9 186 88.2
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.5e-68 264.2 159 81.8
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.3e-67 261.2 159 80.5
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 9.4e-55 218.4 138 78.3
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 1.6e-54 217.6 198 62.1
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 9.8e-52 208.4 118 85.6
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.2e-51 207.2 125 80.8
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 3.7e-51 206.5 118 84.7
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 1.4e-50 204.5 177 62.1
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.1e-50 203.4 170 67.1
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.1e-50 203.4 170 67.1
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 5.4e-50 202.6 121 81.8
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 2.8e-38 163.7 97 79.4
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 8.9e-37 158.7 102 78.4
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 2.7e-33 147.1 119 70.6
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.5e-33 146.7 152 55.9
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 2.5e-31 140.6 113 62.8
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 3.3e-31 140.2 78 88.5
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.3e-31 139.8 110 68.2
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 2.8e-30 137.1 79 84.8
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.6e-30 136.7 109 67.0
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.7e-30 136.3 108 67.6
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 4.7e-30 136.3 88 79.5
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 8.9e-29 132.1 77 83.1
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 5.8e-28 129.4 71 87.3
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 9.8e-28 128.6 67 89.6
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 1.1e-26 125.2 75 82.7
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 2.4e-26 124.0 87 70.1
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 7.8e-25 119.0 72 81.9
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 3.2e-18 97.1 60 81.7
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 7.1e-18 95.9 81 66.7
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 5.6e-15 86.3 52 78.8
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 1.2e-14 85.1 58 74.1
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 2.1e-14 84.3 350 27.1
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 1.1e-07 62.0 40 82.5


User provided reference genes

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