Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.1e-183 646.7 386 100.0
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 3.1e-162 575.5 386 83.9
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 3.4e-161 572.0 385 85.2
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 7.0e-146 521.2 360 81.4
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 3.5e-145 518.8 384 77.9
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.7e-144 516.5 384 77.6
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 8.5e-144 514.2 384 79.2
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.6e-142 510.0 384 82.6
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 5.2e-141 505.0 370 75.4
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 2.5e-135 486.1 359 72.7
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.3e-133 479.6 359 82.2
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 2.3e-128 463.0 360 77.2
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 3.8e-128 462.2 359 76.9
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.2e-121 440.7 369 62.6
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 8.0e-118 427.9 385 62.3
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.4e-114 417.2 364 61.3
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 3.5e-113 412.5 360 61.9
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.5e-111 407.1 392 58.7
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 3.3e-111 406.0 359 61.3
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 7.3e-111 404.8 351 64.7
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 1.2e-110 404.1 396 56.8
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 2.8e-110 402.9 357 61.6
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.1e-109 401.0 351 60.1
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.4e-109 400.6 361 60.7
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 2.3e-109 399.8 359 61.8
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.3e-109 399.8 351 64.4
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.1e-109 399.4 359 61.6
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 6.8e-109 398.3 359 59.3
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 8.9e-109 397.9 359 61.6
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.2e-108 397.5 351 62.7
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 2.6e-108 396.4 355 67.9
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 2.6e-108 396.4 361 60.7
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 4.4e-108 395.6 359 62.1
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 5.8e-108 395.2 362 59.9
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.2e-107 393.3 359 60.4
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 8.3e-107 391.3 359 61.6
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.1e-106 391.0 362 59.9
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 9.2e-106 387.9 359 63.5
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 9.2e-106 387.9 363 60.1
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 4.6e-105 385.6 364 58.8
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.0e-104 384.4 355 59.7
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 1.7e-104 383.6 353 68.0
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 3.0e-104 382.9 364 61.8
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 5.0e-104 382.1 361 65.4
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 8.6e-104 381.3 365 57.5
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.9e-103 380.2 360 60.0
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.5e-103 379.8 364 56.3
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 4.3e-103 379.0 365 58.4
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 9.5e-103 377.9 365 57.3
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 9.5e-103 377.9 357 58.0
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 2.1e-102 376.7 369 57.2
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 2.8e-102 376.3 365 69.3
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 2.8e-102 376.3 358 57.3
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 2.8e-102 376.3 368 61.1
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.6e-102 375.9 354 61.9
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 3.6e-102 375.9 363 63.6
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 6.2e-102 375.2 362 59.7
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 6.2e-102 375.2 377 55.7
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 2.3e-101 373.2 378 55.3
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 3.1e-101 372.9 377 58.6
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 8.9e-101 371.3 354 57.6
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 1.2e-100 370.9 358 57.3
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 7.5e-100 368.2 361 61.8
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 7.5e-100 368.2 359 58.2
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 4.9e-99 365.5 365 59.5
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 8.3e-99 364.8 354 58.5
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.1e-98 362.5 352 55.4
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.6e-97 360.5 377 55.2
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 4.6e-97 359.0 358 57.0
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 2.3e-96 356.7 378 53.7
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.9e-96 355.9 427 49.2
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 6.6e-96 355.1 355 55.8
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.6e-96 355.1 362 56.4
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 8.6e-96 354.8 363 59.0
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 1.5e-95 354.0 376 60.9
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.5e-95 354.0 375 52.5
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 2.5e-95 353.2 386 54.7
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 7.3e-95 351.7 359 53.8
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 2.8e-94 349.7 342 58.8
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 3.6e-94 349.4 367 52.6
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 8.1e-94 348.2 360 52.8
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.8e-93 347.1 351 54.7
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 4.0e-93 345.9 368 58.2
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 5.2e-93 345.5 361 62.9
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 8.9e-93 344.7 379 59.1
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 2.0e-92 343.6 429 48.5
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 2.0e-92 343.6 366 58.2
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 3.8e-91 339.3 367 56.1
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 4.9e-91 339.0 360 56.7
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 4.1e-90 335.9 387 52.5
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 7.1e-90 335.1 360 56.7
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 2.1e-89 333.6 367 53.7
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 3.0e-88 329.7 379 52.5
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.5e-87 327.4 361 58.4
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 2.5e-87 326.6 370 53.8
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 5.6e-87 325.5 355 58.0
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.8e-86 323.2 361 57.9
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 4.7e-86 322.4 385 56.6
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 6.2e-86 322.0 369 52.3
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 8.1e-86 321.6 361 60.1
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.8e-85 320.5 374 57.5
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 3.1e-85 319.7 365 60.3
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 9.0e-85 318.2 382 52.1
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.2e-84 317.8 382 50.3
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 2.6e-84 316.6 382 53.9
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.2e-83 313.5 360 54.7
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 8.4e-83 311.6 378 50.5
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.1e-82 311.2 361 52.6
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 3.2e-82 309.7 354 51.7
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 4.2e-82 309.3 371 57.4
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.6e-81 307.4 367 53.7
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 4.6e-81 305.8 378 57.1
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 6.0e-81 305.4 370 56.8
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 6.0e-81 305.4 370 56.8
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.3e-78 297.7 377 56.8
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 5.3e-77 292.4 413 48.2
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 9.9e-76 288.1 460 47.6
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 6.0e-73 278.9 290 54.5
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.8e-72 277.3 278 60.8
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 2.8e-70 270.0 343 51.3
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 3.4e-68 263.1 383 48.6
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 4.5e-68 262.7 385 45.5
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.2e-65 254.6 319 48.3
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.5e-65 253.1 159 77.4
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 9.6e-63 245.0 297 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 6.9e-61 238.8 404 46.3
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 4.5e-60 236.1 501 37.3
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.7e-59 234.2 388 50.8
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.9e-58 230.7 295 46.1
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.1e-53 213.4 155 67.1
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 5.3e-53 212.6 281 48.0
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 9.4e-50 201.8 98 92.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.9e-47 194.1 99 91.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.9e-47 194.1 99 91.9
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 5.7e-47 192.6 369 38.8
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.3e-46 191.4 145 65.5
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.4e-45 187.2 144 71.5
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 7.9e-41 172.2 93 88.2
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 1.8e-40 171.0 314 42.0
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 2.6e-36 157.1 685 27.6
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.0e-35 152.9 290 38.3
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.0e-35 152.9 290 38.3
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 2.3e-32 144.1 235 42.6
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.7e-31 138.7 235 45.1
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 2.0e-28 131.0 169 52.1
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 2.2e-27 127.5 71 80.3
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 3.3e-23 113.6 76 68.4
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 3.3e-23 113.6 90 52.2
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 3.3e-23 113.6 111 50.5
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 4.4e-23 113.2 156 45.5
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 7.5e-23 112.5 137 51.8
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 2.2e-22 110.9 82 70.7
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 4.8e-22 109.8 92 67.4
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.8e-21 107.8 65 76.9
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.7e-19 101.3 360 28.6
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 5.2e-16 89.7 57 68.4
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 2.0e-15 87.8 133 44.4
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 2.8e-09 67.4 195 30.3
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 3.6e-09 67.0 74 51.4
CAN.G270.3 Capsicum annuum HOM05D004432 ORTHO05D005427 6.3e-06 56.2 46 54.3
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 6.3e-06 56.2 36 69.4


User provided reference genes

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