Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 6.2e-219 763.8 386 100.0
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 1.2e-150 537.0 388 71.4
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 7.7e-145 517.7 383 70.5
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 8.0e-126 454.5 407 63.1
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 5.2e-109 398.7 387 59.2
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 1.5e-108 397.1 408 56.6
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 2.6e-100 369.8 395 55.4
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 5.8e-92 342.0 394 52.5
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 2.9e-91 339.7 413 50.8
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 4.1e-90 335.9 485 44.9
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 1.9e-87 327.0 523 42.6
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 5.8e-68 262.3 433 41.3
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 1.8e-64 250.8 423 40.7
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 2.3e-64 250.4 438 39.3
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 3.7e-62 243.0 420 39.3
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 2.4e-61 240.4 431 38.3
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 4.0e-61 239.6 401 40.1
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 9.0e-61 238.4 408 39.7
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 1.5e-60 237.7 401 42.6
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 2.2e-59 233.8 443 37.5
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 4.9e-59 232.6 426 39.9
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 3.0e-56 223.4 475 34.1
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 5.1e-56 222.6 444 35.6
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 1.5e-55 221.1 464 35.6
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 3.3e-55 219.9 451 35.3
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 3.3e-55 219.9 428 35.5
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 5.7e-55 219.2 417 35.0
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 9.7e-55 218.4 374 38.5
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.2e-54 217.2 408 39.7
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 6.3e-54 215.7 463 35.4
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 1.1e-53 214.9 418 39.7
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 4.1e-53 213.0 426 36.4
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 6.9e-53 212.2 414 37.4
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 1.2e-52 211.5 432 35.9
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 4.5e-52 209.5 408 38.7
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 4.5e-52 209.5 408 38.7
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 1.7e-51 207.6 421 37.3
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 1.7e-51 207.6 469 35.6
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 1.7e-51 207.6 435 36.3
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 6.5e-51 205.7 436 36.2
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 1.1e-50 204.9 420 36.4
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 2.5e-50 203.8 450 32.9
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 2.5e-50 203.8 433 34.9
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 7.2e-50 202.2 422 36.0
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 9.4e-50 201.8 466 33.7
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 1.2e-49 201.4 448 36.2
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 1.6e-49 201.1 471 34.4
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 1.6e-49 201.1 395 35.7
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 6.1e-49 199.1 460 33.0
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 7.9e-49 198.7 439 32.8
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 1.4e-48 198.0 438 31.5
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 2.3e-48 197.2 420 35.5
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 3.0e-48 196.8 434 34.1
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 6.7e-48 195.7 439 31.9
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 1.1e-47 194.9 461 31.2
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 2.5e-47 193.7 451 32.6
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 7.4e-47 192.2 443 34.1
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 7.4e-47 192.2 461 29.3
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 7.4e-47 192.2 440 31.8
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 2.2e-46 190.7 466 32.0
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 2.8e-46 190.3 466 33.3
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 3.7e-46 189.9 445 31.5
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 8.2e-46 188.7 416 33.7
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 8.2e-46 188.7 384 37.0
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 1.4e-45 188.0 452 31.9
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 2.4e-45 187.2 467 30.2
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.4e-45 187.2 407 37.8
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 4.5e-44 183.0 243 44.9
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 3.2e-42 176.8 438 33.1
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 4.2e-42 176.4 370 35.7
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 1.2e-41 174.9 457 30.4
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 1.2e-41 174.9 457 30.4
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 3.6e-41 173.3 438 32.0
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 2.3e-40 170.6 428 31.1
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 6.7e-40 169.1 439 33.5
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 2.2e-38 164.1 428 30.8
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 7.0e-37 159.1 218 41.7
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 9.1e-37 158.7 258 41.5
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 9.1e-37 158.7 450 32.0
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 5.5e-34 149.4 461 31.5
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 2.1e-33 147.5 443 28.0
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 8.0e-33 145.6 253 35.6
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 1.0e-32 145.2 200 43.0
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 3.0e-32 143.7 187 41.7
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 2.6e-31 140.6 139 54.0
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 8.2e-30 135.6 267 36.7
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 1.1e-29 135.2 376 33.2
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 5.9e-28 129.4 354 30.2
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 3.2e-26 123.6 235 35.3
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 4.2e-26 123.2 183 42.1
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 6.1e-25 119.4 168 39.3
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 1.4e-24 118.2 348 28.2
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 3.0e-24 117.1 191 36.1
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 2.2e-22 110.9 79 65.8
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 1.4e-21 108.2 157 38.9
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 9.1e-21 105.5 106 47.2
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 5.0e-19 99.8 335 29.3
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 7.2e-18 95.9 139 38.1
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 1.8e-16 91.3 154 35.7
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 1.8e-16 91.3 154 35.7
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.6e-15 87.4 97 47.4
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 7.5e-15 85.9 83 53.0
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 1.4e-13 81.6 441 25.4
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 1.2e-12 78.6 56 62.5
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 2.3e-11 74.3 77 46.8
VMungo0251G2390 Vigna mungo HOM05D007068 ORTHO05D008590 2.1e-09 67.8 133 29.3
CBR_g21755 Chara braunii HOM05D007068 ORTHO05D008590 4.7e-09 66.6 127 31.5
VMungo0720G2542 Vigna mungo HOM05D059265 ORTHO05D008590 8.3e-06 55.8 120 29.2


User provided reference genes

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