Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 0.0e+00 2161.7 1092 100.0
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 0.0e+00 1895.6 1093 88.3
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 0.0e+00 1888.2 1073 89.5
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 0.0e+00 1860.5 1094 86.0
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1689.1 1093 79.6
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1686.4 1093 79.3
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 0.0e+00 1673.3 1095 78.1
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1600.9 1095 75.3
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1589.3 1094 75.1
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 0.0e+00 1526.5 1093 73.3
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 0.0e+00 1506.9 1094 72.6
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 0.0e+00 1426.4 1093 69.7
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 0.0e+00 1392.1 966 75.9
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1191.8 1126 57.7
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1179.9 1141 56.7
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1175.6 1136 58.0
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1163.3 1127 57.4
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1152.1 1137 55.9
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1144.0 1130 56.5
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1132.9 1136 55.8
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1125.9 1122 56.7
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 1121.3 1114 57.4
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1115.1 1134 55.6
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1102.8 1127 55.4
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1102.8 1127 55.4
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1099.7 1130 55.0
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 0.0e+00 1088.9 1114 55.8
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1086.6 1131 54.5
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1086.2 1131 54.4
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1080.9 1147 54.6
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 5.3e-308 1061.2 1108 54.3
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 5.3e-308 1061.2 1112 55.1
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.6e-307 1058.9 1110 54.1
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 7.1e-305 1050.8 1137 53.9
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.6e-304 1049.7 1122 54.5
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.5e-302 1043.1 1144 52.5
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.3e-301 1040.0 1101 54.3
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 9.0e-300 1033.9 1123 52.8
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 3.4e-299 1031.9 1006 58.3
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.5e-299 1031.6 1102 53.6
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 1.0e-298 1030.4 1140 52.1
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.1e-297 1026.9 1107 52.9
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 1.6e-296 1023.1 1116 52.2
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 5.1e-295 1018.1 1125 52.2
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 2.0e-294 1016.1 1119 52.5
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 9.1e-292 1007.3 1108 51.7
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 1.2e-291 1006.9 1028 55.6
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.2e-291 1006.9 1144 51.0
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.0e-290 1003.8 1135 51.8
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.3e-290 1003.4 1158 51.0
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 5.0e-290 1001.5 1114 51.6
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.9e-289 999.6 1109 51.5
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.5e-289 998.0 991 57.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.3e-285 986.9 1146 49.7
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.3e-285 986.9 1101 52.4
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 1.8e-284 983.0 1188 48.6
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 2.6e-283 979.2 1123 51.1
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 5.9e-283 978.0 1094 51.9
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 8.5e-282 974.2 1136 50.0
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 6.3e-277 958.0 951 57.4
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.0e-276 954.5 965 56.5
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.0e-274 950.7 1147 49.3
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.8e-271 939.9 1181 47.5
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.0e-266 924.1 1116 48.0
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.0e-263 914.1 1118 48.5
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 5.2e-263 911.8 1117 48.6
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.0e-262 909.8 1107 48.4
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 3.4e-262 909.1 1101 49.1
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.3e-261 907.1 1101 48.0
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.1e-260 904.0 1114 47.9
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 5.4e-260 901.7 1116 48.4
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.0e-259 899.8 1111 48.0
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.7e-259 899.4 1117 47.4
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 7.7e-259 897.9 1120 47.9
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.0e-258 897.5 1107 48.4
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.3e-258 896.3 1107 48.4
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 3.8e-258 895.6 1107 49.1
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 6.6e-258 894.8 1117 48.2
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.5e-257 893.6 1105 48.3
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.5e-257 893.6 1129 48.3
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 4.2e-257 892.1 1113 48.0
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.6e-256 890.2 1114 47.5
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 3.6e-256 889.0 1157 47.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 6.1e-256 888.3 1103 47.6
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.0e-255 887.5 1109 47.5
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.0e-255 887.5 1105 47.5
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 4.0e-255 885.6 1144 47.6
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 4.0e-255 885.6 876 58.6
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 8.9e-255 884.4 1044 49.1
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.2e-254 884.0 1105 47.2
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.2e-254 884.0 1105 47.2
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 7.5e-254 881.3 1104 48.1
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 7.5e-254 881.3 1105 47.1
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 6.3e-253 878.2 1102 48.2
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.4e-252 875.2 1109 47.8
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 5.4e-252 875.2 1099 48.4
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.9e-250 869.4 1080 49.5
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 3.3e-249 865.9 1114 47.1
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.2e-248 864.0 1171 46.7
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.3e-245 854.0 1143 47.3
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 6.4e-245 851.7 1102 46.6
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 6.4e-245 851.7 1108 47.3
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.2e-243 847.4 1145 46.3
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.6e-233 812.0 702 63.5
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.1e-231 807.7 702 63.5
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 5.4e-228 795.4 892 51.3
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 5.4e-228 795.4 1136 42.8
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.3e-226 790.8 708 61.9
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.2e-224 784.3 745 59.7
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 4.9e-221 772.3 768 57.9
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.1e-211 740.3 695 59.1
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.1e-209 734.6 773 54.7
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.4e-207 726.9 882 49.2
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.4e-206 723.0 554 69.9
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 8.4e-205 718.4 1132 41.5
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 9.3e-204 714.9 861 49.9
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.1e-201 708.0 1136 40.3
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.0e-199 698.4 537 68.9
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 8.4e-197 691.8 862 47.9
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 1.0e-194 684.9 850 49.8
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 2.8e-192 676.8 643 60.5
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 8.4e-189 665.2 448 75.2
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 9.3e-188 661.8 948 44.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 1.2e-182 644.8 1114 39.2
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 8.5e-173 612.1 648 55.4
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.4e-154 551.6 926 40.9
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.7e-128 464.9 268 88.1
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.7e-128 464.9 268 88.1
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 5.4e-127 459.9 790 40.0
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.4e-122 445.3 735 41.1
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 7.1e-119 433.0 694 40.2
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 9.9e-113 412.5 448 54.2
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.6e-102 378.6 593 42.0
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.0e-101 375.9 593 41.8
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 6.2e-99 366.7 328 56.1
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.9e-96 357.8 206 87.4
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 5.3e-74 283.9 613 36.1
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 2.1e-62 245.4 221 56.6
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 5.2e-53 214.2 788 27.9
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 6.7e-53 213.8 142 77.5
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.8e-51 208.4 666 29.0
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 3.1e-42 178.3 157 63.1
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-41 176.4 134 67.9
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 8.0e-38 163.7 91 90.1
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 3.1e-34 151.8 91 79.1
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 9.1e-34 150.2 159 57.2
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 2.8e-30 138.7 180 42.8
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 5.7e-20 104.4 67 70.1
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 2.2e-19 102.4 388 28.4
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.3e-13 82.4 114 38.6
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.1e-10 73.6 390 27.2
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 4.1e-10 71.6 111 36.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 6.0e-09 67.8 228 30.3
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 6.0e-09 67.8 110 36.4
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 7.8e-09 67.4 138 34.1
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 6.6e-08 64.3 125 32.8


User provided reference genes

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