Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.4e-272 941.0 459 100.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.6e-242 842.4 459 89.1
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 3.2e-238 828.2 459 87.8
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 6.4e-207 724.2 460 77.2
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.6e-205 719.5 462 78.6
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 2.5e-203 712.2 461 77.0
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.0e-200 702.6 457 77.9
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 7.6e-200 700.7 462 76.8
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.7e-167 593.2 462 68.2
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.7e-165 585.9 458 64.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.8e-162 575.9 456 63.2
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.7e-162 575.5 461 64.0
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.1e-158 563.9 461 63.3
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.5e-158 563.5 456 63.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 2.1e-157 559.7 471 59.9
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 3.6e-157 558.9 454 62.8
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 4.7e-157 558.5 475 61.1
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 4.0e-156 555.4 473 60.3
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.8e-156 554.7 456 61.2
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 8.8e-156 554.3 470 60.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.2e-155 553.9 477 60.0
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 2.0e-155 553.1 441 62.8
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.4e-155 552.4 473 60.3
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 4.4e-155 552.0 471 59.9
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 9.8e-155 550.8 474 59.1
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 9.8e-155 550.8 474 58.9
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.7e-154 550.1 471 59.2
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 2.2e-154 549.7 467 59.5
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.8e-154 549.3 474 59.1
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 6.3e-154 548.1 474 58.9
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.4e-153 546.2 473 59.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 7.0e-153 544.7 468 59.4
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 5.9e-152 541.6 456 57.7
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.3e-151 540.4 475 56.2
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 5.0e-151 538.5 480 55.8
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.5e-151 538.1 461 59.9
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.5e-151 538.1 476 56.9
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 6.5e-151 538.1 470 57.7
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 6.5e-151 538.1 474 58.6
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.9e-150 536.6 470 58.7
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.5e-150 536.2 472 59.1
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.5e-150 536.2 475 56.4
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 3.2e-150 535.8 475 56.0
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 7.2e-150 534.6 477 57.4
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.2e-149 533.9 476 58.4
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.2e-149 533.9 476 57.4
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.2e-149 533.9 455 59.1
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.6e-149 533.5 458 60.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.1e-149 533.1 466 57.3
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 2.1e-149 533.1 471 58.8
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.6e-149 532.3 476 58.0
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 4.7e-149 531.9 451 60.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.1e-149 531.6 469 58.2
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.1e-149 531.6 469 58.0
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 6.1e-149 531.6 468 57.3
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 8.0e-149 531.2 475 56.0
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.0e-149 531.2 476 58.0
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.0e-148 530.8 476 58.4
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.0e-148 530.8 475 56.4
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.0e-148 530.8 476 57.8
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.0e-148 529.3 471 58.0
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.8e-148 527.7 476 57.8
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.5e-147 526.9 469 57.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.0e-147 526.6 471 58.2
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.4e-147 525.8 471 58.0
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 4.4e-147 525.4 468 57.3
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.7e-147 525.0 471 58.4
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.4e-145 520.4 477 55.8
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 9.2e-145 517.7 477 55.6
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 1.2e-144 517.3 468 56.2
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.0e-144 516.5 466 55.8
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 3.5e-144 515.8 477 54.3
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 1.7e-143 513.5 471 55.8
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.5e-142 510.4 465 56.8
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 7.3e-142 508.1 475 54.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.0e-140 504.2 473 54.5
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.9e-138 496.1 463 53.3
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.2e-136 490.7 475 53.9
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.6e-136 490.3 468 54.3
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.5e-136 489.2 457 55.6
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.3e-135 487.3 472 52.3
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 8.6e-135 484.6 470 53.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.5e-134 483.8 476 53.2
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.9e-134 483.4 453 53.9
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 9.5e-134 481.1 454 53.7
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.6e-133 480.3 471 52.7
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 2.8e-133 479.6 453 54.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.8e-133 479.6 455 54.1
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.6e-133 479.2 454 54.0
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 4.0e-132 475.7 454 54.2
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 4.0e-132 475.7 453 54.3
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.0e-132 475.7 454 53.3
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-131 473.8 454 54.2
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.5e-131 473.8 472 52.3
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.0e-131 473.4 475 51.2
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.0e-131 473.4 456 53.3
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-131 473.0 453 53.9
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 4.4e-131 472.2 453 53.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 7.5e-131 471.5 453 54.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 9.8e-131 471.1 454 53.1
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.7e-130 470.3 453 52.1
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 3.7e-130 469.2 475 49.3
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.4e-129 467.2 454 52.4
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-129 466.8 453 51.9
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.4e-129 466.5 461 52.5
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 5.4e-129 465.3 466 51.9
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 7.8e-128 461.5 466 51.7
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 7.8e-128 461.5 471 51.0
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.0e-127 461.1 465 51.4
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-127 460.7 454 52.2
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-127 460.7 454 52.2
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.7e-127 460.3 456 52.6
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.3e-127 459.9 411 55.2
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.9e-127 459.1 480 50.0
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.6e-126 455.3 452 52.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 3.6e-125 452.6 445 54.6
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.1e-124 451.1 451 51.7
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.8e-124 450.3 470 50.0
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 4.0e-124 449.1 476 50.2
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 6.8e-124 448.4 454 52.0
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 8.9e-124 448.0 413 53.5
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.0e-123 446.8 414 53.6
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 2.6e-123 446.4 453 52.8
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 2.6e-123 446.4 453 52.8
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 9.9e-123 444.5 466 50.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-122 444.1 454 51.5
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.9e-122 442.2 410 52.9
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.9e-122 442.2 414 54.3
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.1e-120 436.8 453 51.7
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 7.8e-120 434.9 453 51.4
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.0e-119 433.0 429 52.4
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.1e-119 432.2 472 50.8
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 6.6e-119 431.8 484 46.5
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-118 429.9 429 52.2
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.3e-118 429.5 429 52.0
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.3e-118 429.5 429 52.0
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.8e-116 421.8 475 48.2
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.3e-114 417.5 402 52.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 4.6e-112 409.1 385 51.2
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 8.1e-109 398.3 443 47.9
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 3.1e-108 396.4 415 50.1
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.6e-104 384.0 341 56.6
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.6e-104 384.0 341 56.6
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.7e-104 383.3 460 45.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.5e-104 382.9 417 47.0
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.3e-98 364.4 469 42.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.3e-95 353.6 428 42.3
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.4e-92 343.6 200 85.0
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-91 340.9 456 39.5
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.4e-89 333.6 454 40.3
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.1e-88 330.5 434 40.1
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.7e-88 330.1 414 45.4
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-87 327.4 454 38.5
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.3e-87 327.0 457 39.8
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-85 321.2 337 50.1
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.8e-69 266.9 325 42.5
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.7e-64 250.4 337 45.1
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-57 227.6 205 58.0
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.5e-57 227.3 205 58.0
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.6e-54 217.2 217 51.2
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 9.7e-54 215.3 211 54.0
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 4.7e-48 196.4 166 60.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.4e-46 189.9 165 55.2
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.6e-35 154.8 188 46.3
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.3e-29 135.2 341 32.6
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 1.0e-26 125.6 171 46.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-23 115.5 286 31.1
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.6e-19 101.7 124 47.6
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.1e-16 91.3 89 53.9
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.5e-14 85.1 91 51.6
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 1.1e-09 68.9 127 36.2
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.3e-07 61.2 52 50.0


User provided reference genes

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