Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 9.6e-256 886.3 449 100.0
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 4.4e-216 754.6 452 84.3
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 6.7e-209 730.7 445 82.9
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 5.0e-204 714.5 451 80.7
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 1.5e-187 659.8 452 74.6
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 3.4e-176 622.1 452 72.1
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 9.2e-174 614.0 446 70.4
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 1.2e-173 613.6 438 71.7
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 5.4e-166 588.2 446 68.8
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 3.7e-159 565.5 447 66.7
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 8.1e-154 547.7 433 63.3
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 3.4e-152 542.3 438 62.8
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 2.7e-149 532.7 432 61.8
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 6.0e-149 531.6 432 61.8
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 2.3e-148 529.6 434 60.8
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 2.3e-148 529.6 431 60.8
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 1.8e-145 520.0 437 60.6
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 1.5e-144 516.9 448 60.0
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 9.9e-144 514.2 432 61.6
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 4.9e-143 511.9 434 59.4
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 5.4e-142 508.4 431 59.9
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 3.5e-141 505.8 454 58.1
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.7e-140 503.4 430 60.5
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 2.3e-140 503.1 430 60.5
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 1.1e-139 500.7 422 61.6
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 2.5e-139 499.6 430 60.5
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 7.3e-139 498.0 435 57.0
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 6.9e-137 491.5 424 59.2
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.5e-136 490.3 423 59.6
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 1.5e-136 490.3 422 58.5
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 3.4e-136 489.2 418 57.2
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 5.8e-136 488.4 418 57.2
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.7e-135 486.9 423 59.6
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 1.1e-134 484.2 429 56.9
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 1.9e-134 483.4 433 57.7
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 2.4e-134 483.0 427 58.3
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 3.2e-134 482.6 418 56.9
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 4.2e-134 482.3 424 58.0
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 7.1e-134 481.5 424 58.3
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 4.6e-133 478.8 427 57.6
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 1.8e-132 476.9 454 55.1
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 2.3e-132 476.5 425 57.9
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 2.3e-132 476.5 420 58.1
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 3.0e-132 476.1 433 56.8
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 3.0e-132 476.1 426 57.3
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 3.9e-132 475.7 425 59.1
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 3.3e-131 472.6 446 56.7
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 1.6e-130 470.3 427 57.1
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 6.2e-130 468.4 421 56.8
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 1.1e-129 467.6 428 55.8
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 1.4e-129 467.2 421 55.1
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 3.1e-129 466.1 450 57.3
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 3.1e-129 466.1 430 55.3
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 5.3e-129 465.3 428 56.3
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 6.9e-129 464.9 419 57.0
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 4.5e-128 462.2 430 55.6
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 5.8e-128 461.8 313 70.0
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 5.8e-128 461.8 407 57.5
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 3.8e-127 459.1 419 55.8
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 1.6e-125 453.8 435 53.6
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 3.5e-125 452.6 437 56.1
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 4.6e-125 452.2 450 54.0
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 7.4e-123 444.9 440 54.8
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 1.6e-122 443.7 420 54.0
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 3.1e-121 439.5 423 55.6
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 1.2e-120 437.6 422 53.6
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 2.0e-120 436.8 430 52.6
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 5.8e-120 435.3 467 51.4
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 1.7e-119 433.7 424 52.6
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 3.8e-119 432.6 399 55.6
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 4.9e-119 432.2 421 53.9
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 4.9e-119 432.2 492 48.0
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 8.4e-119 431.4 424 52.6
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 3.2e-118 429.5 422 53.1
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 6.0e-117 425.2 425 51.8
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 9.7e-115 417.9 424 52.4
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 9.7e-115 417.9 427 52.0
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 2.2e-114 416.8 421 51.5
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 4.8e-114 415.6 429 51.5
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 4.8e-114 415.6 429 51.7
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 6.3e-114 415.2 425 52.9
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.4e-113 414.1 435 52.4
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 1.2e-112 411.0 371 58.0
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 1.3e-111 407.5 420 51.2
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 1.7e-111 407.1 426 51.2
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 2.9e-111 406.4 440 49.8
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 3.8e-111 406.0 415 50.8
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 1.1e-110 404.4 362 55.0
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 4.2e-110 402.5 424 51.7
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 1.2e-109 401.0 292 64.7
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 2.8e-106 389.8 423 48.7
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 1.1e-105 387.9 414 52.4
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 2.4e-105 386.7 419 47.5
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 1.4e-102 377.5 452 47.3
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 5.1e-100 369.0 436 47.5
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 2.9e-95 353.2 418 46.9
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 1.0e-92 344.7 432 43.5
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.4e-89 334.3 311 56.3
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 3.0e-84 316.6 340 50.6
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 2.4e-81 307.0 441 40.6
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 3.0e-76 290.0 432 43.1
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 8.3e-58 228.8 382 39.0
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 1.6e-56 224.6 261 49.0
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 3.0e-55 220.3 369 36.6
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 5.6e-54 216.1 165 62.4
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 6.2e-53 212.6 148 68.2
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 1.5e-51 208.0 269 45.0
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 1.2e-48 198.4 275 38.2
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 2.1e-48 197.6 143 65.7
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 5.1e-47 193.0 225 44.4
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 7.6e-43 179.1 246 37.8
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 6.4e-42 176.0 352 30.1
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 1.4e-41 174.9 218 47.2
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 5.6e-38 162.9 141 53.2
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 3.6e-37 160.2 143 57.3
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.2e-35 155.2 160 50.6
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 3.3e-30 137.1 152 47.4
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 9.6e-30 135.6 356 28.7
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 6.4e-18 96.3 253 24.5
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 4.2e-17 93.6 61 70.5
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 5.4e-17 93.2 61 72.1
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 6.9e-12 76.3 106 41.5
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 2.7e-08 64.3 159 25.8


User provided reference genes

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