Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 5.1e-162 574.3 282 100.0
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 2.2e-141 505.8 282 87.9
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 1.5e-137 493.0 282 86.5
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 3.4e-134 481.9 282 85.1
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 5.8e-134 481.1 282 83.7
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 3.0e-130 468.8 283 82.7
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 7.4e-129 464.2 283 82.0
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 1.5e-126 456.4 284 81.3
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 4.5e-126 454.9 283 80.9
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 1.4e-124 449.9 283 79.2
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 9.7e-121 437.2 327 70.9
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 4.8e-120 434.9 283 77.7
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 8.0e-99 364.4 281 64.1
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 1.7e-96 356.7 286 64.3
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 7.0e-95 351.3 281 63.0
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 2.6e-94 349.4 283 64.3
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 7.7e-94 347.8 275 63.6
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 2.2e-93 346.3 283 61.8
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 2.9e-93 345.9 283 61.8
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 2.9e-93 345.9 279 62.7
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 2.5e-92 342.8 283 61.1
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 4.2e-92 342.0 319 57.7
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 8.0e-91 337.8 264 65.9
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 1.8e-90 336.7 286 61.5
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 2.3e-90 336.3 268 63.4
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 2.3e-90 336.3 266 64.7
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 3.0e-90 335.9 273 63.7
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 6.8e-90 334.7 269 64.3
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 1.2e-89 334.0 285 62.1
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 5.7e-89 331.6 270 63.0
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 5.7e-89 331.6 268 61.6
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 5.7e-89 331.6 261 66.3
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 9.8e-89 330.9 273 61.9
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 2.2e-88 329.7 266 62.8
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 2.8e-88 329.3 304 56.9
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 4.8e-88 328.6 273 62.3
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 6.3e-88 328.2 265 63.4
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 1.4e-87 327.0 272 61.8
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 2.4e-87 326.2 272 61.0
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 3.1e-87 325.9 267 61.0
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 2.0e-86 323.2 265 60.4
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 2.7e-86 322.8 266 60.9
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 3.5e-86 322.4 263 61.6
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 1.3e-85 320.5 287 59.6
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 1.7e-85 320.1 256 63.7
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 5.0e-85 318.5 266 58.3
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 1.5e-84 317.0 261 61.7
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 1.5e-84 317.0 277 58.5
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 9.4e-84 314.3 226 68.6
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 9.4e-84 314.3 266 60.9
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 1.2e-83 313.9 263 60.1
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 6.1e-83 311.6 272 58.8
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 6.1e-83 311.6 270 59.3
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 8.0e-83 311.2 263 60.1
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 1.4e-82 310.5 297 54.5
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 2.3e-82 309.7 271 56.8
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 5.2e-82 308.5 271 56.5
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 1.2e-81 307.4 273 58.6
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 2.6e-81 306.2 209 70.8
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 4.4e-81 305.4 213 70.4
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 5.7e-81 305.1 269 58.0
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 7.5e-81 304.7 278 58.6
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 1.3e-80 303.9 261 59.4
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 1.7e-80 303.5 273 58.6
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 1.7e-80 303.5 273 58.6
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 3.7e-80 302.4 263 58.2
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 4.9e-80 302.0 274 56.6
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 8.3e-80 301.2 288 54.9
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 1.8e-79 300.1 267 57.3
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 2.4e-79 299.7 266 58.3
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 3.1e-79 299.3 311 52.1
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 9.1e-79 297.7 234 63.7
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 2.0e-78 296.6 262 57.6
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 2.9e-77 292.7 264 58.0
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 2.9e-77 292.7 287 54.0
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 2.9e-77 292.7 287 54.0
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.9e-76 290.0 236 64.0
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 1.9e-76 290.0 236 61.9
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 2.5e-76 289.7 267 56.9
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 7.2e-76 288.1 300 52.7
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 9.5e-76 287.7 284 54.2
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 9.5e-76 287.7 233 59.7
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 1.6e-75 287.0 233 62.7
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 2.3e-74 283.1 273 55.3
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 2.0e-73 280.0 278 56.1
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 9.8e-73 277.7 266 55.6
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 2.9e-72 276.2 212 63.2
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 8.3e-72 274.6 267 53.2
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 4.6e-70 268.9 261 54.0
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 1.3e-69 267.3 202 68.3
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 3.9e-69 265.8 180 71.1
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 5.0e-69 265.4 193 71.0
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 1.9e-68 263.5 264 51.1
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 2.5e-68 263.1 210 63.3
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 3.3e-68 262.7 233 58.8
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 4.3e-68 262.3 264 51.9
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 4.7e-67 258.8 209 61.2
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 3.7e-64 249.2 248 52.8
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 9.2e-63 244.6 197 64.0
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 1.2e-62 244.2 242 51.7
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 6.0e-62 241.9 239 51.9
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 1.7e-61 240.4 170 71.8
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 3.0e-61 239.6 208 58.7
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 1.5e-60 237.3 215 56.3
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 1.9e-60 236.9 190 63.7
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 2.1e-59 233.4 233 57.5
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 3.1e-58 229.6 235 54.9
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 2.6e-57 226.5 219 53.9
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 9.8e-57 224.6 190 61.6
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 3.2e-55 219.5 213 53.1
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 1.2e-54 217.6 207 51.2
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 7.8e-54 214.9 158 67.7
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 6.2e-51 205.3 177 58.8
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.2e-49 201.1 158 62.7
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 7.6e-49 198.4 162 62.3
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 2.2e-48 196.8 255 47.5
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 4.9e-48 195.7 224 45.1
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 1.4e-47 194.1 188 54.8
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.1e-47 192.6 172 57.6
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 6.0e-46 188.7 172 57.0
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 4.7e-43 179.1 249 41.0
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 3.1e-42 176.4 244 41.8
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 5.8e-41 172.2 193 50.3
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 8.1e-35 151.8 135 52.6
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 5.8e-33 145.6 202 41.6
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 3.8e-32 142.9 280 35.7
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 4.2e-31 139.4 287 35.2
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 5.1e-29 132.5 131 55.7
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 9.6e-28 128.3 158 46.8
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 5.1e-21 105.9 208 38.5
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 5.6e-20 102.4 126 43.7
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 1.4e-15 87.8 61 65.6
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 3.0e-13 80.1 63 58.7
CDE02G3151 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 2.5e-12 77.0 85 45.9
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 2.1e-11 73.9 102 40.2
Zm00001eb049210 Zea mays HOM05D001870 ORTHO05D001797 7.9e-06 55.5 44 56.8
Zm00001eb265170 Zea mays HOM05D001689 ORTHO05D001643 7.9e-06 55.5 44 56.8


User provided reference genes

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