Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1926.8 1004 100.0
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1906.0 1047 95.9
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1582.0 1053 81.0
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1575.1 1022 80.3
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1509.6 990 79.7
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1507.7 1018 77.8
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1482.6 1047 75.1
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1444.9 1020 75.3
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1439.1 1048 74.0
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1429.5 1050 72.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1426.8 1020 74.1
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1389.8 1023 72.7
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1256.9 1007 65.7
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1219.9 1018 63.5
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1208.0 1151 58.7
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1206.4 1019 63.1
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1197.6 1046 62.9
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1194.1 1022 63.2
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1181.4 1015 63.2
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1181.0 1017 63.6
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1174.1 1048 61.6
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1173.3 1025 61.6
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1170.6 983 63.6
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1158.3 1017 62.0
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1154.8 1028 61.2
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1154.8 1015 61.1
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1149.4 1017 61.1
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1147.1 992 61.4
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1146.7 1026 60.3
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1143.3 1042 59.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1137.9 1047 58.6
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1137.9 1032 59.4
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1137.1 1037 60.4
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1130.5 1044 60.0
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1129.8 1051 60.4
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1123.2 1016 58.7
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1120.5 1016 59.0
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1119.8 1011 59.1
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1119.8 1048 57.9
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1102.8 1043 56.5
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1099.7 1023 58.2
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1098.6 937 63.1
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1095.5 1017 59.3
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1092.8 1022 57.7
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1082.4 1048 56.5
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1079.3 1017 58.6
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1077.4 1027 57.8
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1076.2 1043 56.5
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1075.8 969 60.0
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1075.1 1017 58.9
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 2.3e-310 1068.9 1016 56.9
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 4.4e-309 1064.7 1017 57.2
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 2.2e-308 1062.4 1021 56.4
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 4.9e-308 1061.2 1022 55.6
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 8.3e-308 1060.4 1023 57.1
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 2.4e-307 1058.9 1006 57.4
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 2.0e-301 1039.3 1019 57.0
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 1.3e-300 1036.6 1031 55.3
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 5.4e-299 1031.2 1034 55.1
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 1.6e-298 1029.6 1057 53.8
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 2.0e-298 1029.2 1025 56.5
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 4.6e-298 1028.1 1021 55.3
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.1e-296 1023.5 1020 56.0
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 4.3e-296 1021.5 1010 56.9
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 2.0e-293 1012.7 1064 53.3
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 7.5e-293 1010.7 1023 55.7
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 8.3e-292 1007.3 1052 52.6
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 5.4e-291 1004.6 1024 54.5
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 9.2e-291 1003.8 1016 55.1
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 2.7e-290 1002.3 1024 53.7
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 1.7e-289 999.6 1061 53.0
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 2.5e-288 995.7 1023 53.2
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 6.8e-286 987.6 1062 52.2
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 9.2e-283 977.2 1062 52.2
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.1e-282 976.1 1022 54.0
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 7.8e-282 974.2 1054 51.9
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 7.8e-282 974.2 1054 51.9
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 3.0e-281 972.2 1048 52.5
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 5.6e-280 968.0 1055 51.7
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 2.1e-279 966.1 1055 51.6
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 7.6e-277 957.6 1080 50.6
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 1.1e-272 943.7 1021 51.5
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 2.5e-272 942.6 1045 51.8
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 1.2e-266 923.7 1014 51.0
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.1e-259 900.6 1176 46.9
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 1.3e-257 893.6 567 81.3
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 1.1e-251 874.0 939 52.9
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 5.5e-251 871.7 757 60.9
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.2e-250 870.5 751 62.3
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 4.6e-250 868.6 751 62.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 9.6e-248 860.9 853 54.5
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.2e-245 854.0 741 62.3
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 2.0e-245 853.2 982 51.0
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 2.6e-237 826.2 783 58.0
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 2.5e-235 819.7 752 59.2
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 9.1e-230 801.2 947 49.0
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.2e-223 780.0 978 47.5
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 2.1e-194 683.7 647 56.4
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 4.0e-193 679.5 560 65.2
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 3.6e-170 603.2 645 51.6
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.0e-168 597.4 614 53.7
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 8.4e-167 592.0 1024 37.4
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 7.3e-155 552.4 897 39.5
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 7.6e-144 515.8 928 36.7
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.1e-142 511.9 690 43.6
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.2e-141 508.4 609 49.1
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 1.8e-140 504.6 1002 37.1
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 5.9e-128 463.0 436 56.7
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 1.0e-103 382.5 248 81.5
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 3.6e-93 347.4 757 35.7
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 8.0e-93 346.3 248 72.6
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.3e-90 336.3 318 54.4
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.3e-79 301.6 394 45.9
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 1.8e-76 292.0 243 63.4
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 4.0e-76 290.8 738 31.0
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-73 282.0 447 38.5
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 8.6e-71 273.1 204 67.2
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.1e-68 266.2 356 43.0
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.8e-68 265.4 264 57.6
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.9e-65 255.4 243 60.1
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 2.4e-57 228.4 904 27.1
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 4.3e-54 217.6 251 51.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 6.2e-53 213.8 192 60.9
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.2e-43 183.0 139 71.9
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 6.4e-42 177.2 280 43.6
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 3.6e-37 161.4 108 74.1
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 5.6e-30 137.5 86 81.4
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 3.9e-23 114.8 76 75.0
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.9e-18 98.6 67 73.1
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 4.9e-18 97.8 68 73.5
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.5e-14 86.3 51 88.2
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.6e-13 82.8 294 25.9
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.2e-11 76.6 70 52.9
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 2.6e-11 75.5 353 26.1
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 1.6e-08 66.2 45 73.3


User provided reference genes

Program Settings