Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 0.0e+00 1113.6 563 100.0
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 2.2e-257 892.1 588 79.3
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 5.6e-253 877.5 566 80.4
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.8e-252 875.2 574 79.6
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 8.3e-249 863.6 574 77.9
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.4e-240 836.3 582 74.6
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 7.1e-240 833.9 572 74.8
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 8.4e-233 810.4 564 74.5
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 2.4e-227 792.3 576 70.7
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 1.2e-223 780.0 564 71.1
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-211 740.3 574 66.4
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-210 736.1 580 65.9
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 8.5e-193 677.6 572 62.4
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 4.8e-188 661.8 573 61.1
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-184 649.8 611 59.4
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-184 649.8 611 59.4
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 5.0e-177 625.2 572 56.6
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.5e-176 623.6 568 57.6
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 3.2e-176 622.5 584 56.2
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 4.5e-170 602.1 588 57.8
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 5.9e-170 601.7 573 57.1
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.5e-168 597.0 572 55.1
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.2e-168 595.9 572 57.7
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.0e-166 590.9 572 54.9
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.8e-166 590.1 583 55.9
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.3e-166 589.7 576 54.2
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 6.8e-166 588.2 581 55.8
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.4e-163 580.5 575 53.0
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.4e-163 579.7 573 53.2
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 2.0e-162 576.6 580 52.2
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 2.7e-162 576.2 652 49.5
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 4.5e-162 575.5 569 55.5
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 7.2e-160 568.2 591 53.8
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.1e-159 566.6 585 52.6
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.0e-159 564.7 589 54.2
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 2.3e-158 563.1 561 53.3
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 3.0e-158 562.8 605 51.2
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.2e-157 560.8 589 52.5
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.8e-150 537.0 600 51.7
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.0e-149 533.5 616 51.6
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.7e-148 530.4 579 49.4
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.4e-147 526.6 421 64.1
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 4.1e-147 525.8 602 48.8
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 9.2e-147 524.6 587 51.8
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.2e-146 524.2 568 49.6
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.0e-146 523.5 624 50.3
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 3.5e-146 522.7 569 50.1
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 4.6e-146 522.3 575 48.5
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 4.6e-146 522.3 573 49.4
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 3.9e-145 519.2 576 49.0
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.5e-144 517.3 580 46.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 4.3e-144 515.8 567 49.6
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 4.7e-143 512.3 584 48.8
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 6.2e-143 511.9 565 47.8
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 6.2e-143 511.9 488 55.9
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 4.0e-142 509.2 565 47.6
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 4.4e-141 505.8 562 49.3
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 5.8e-141 505.4 568 47.0
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 3.7e-140 502.7 610 47.9
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.1e-139 501.1 581 47.2
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.4e-139 500.7 658 45.6
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.4e-139 500.7 581 47.0
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 1.9e-139 500.4 584 47.8
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.9e-139 500.4 503 53.9
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 1.2e-138 497.7 572 47.9
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 2.7e-138 496.5 581 47.8
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.7e-137 493.8 455 55.4
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.1e-136 491.1 572 47.0
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 1.9e-136 490.3 626 46.8
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 4.3e-136 489.2 574 46.5
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.2e-135 487.6 569 48.9
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 2.8e-135 486.5 597 47.4
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 3.6e-135 486.1 633 44.5
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 4.7e-135 485.7 610 47.0
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.4e-134 484.2 477 53.2
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.0e-134 482.6 570 47.2
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 4.0e-134 482.6 575 47.3
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 5.2e-134 482.3 487 53.6
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 9.9e-133 478.0 578 47.4
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 1.1e-131 474.6 599 46.7
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 4.1e-131 472.6 571 47.3
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 3.5e-130 469.5 649 43.5
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.1e-128 464.5 433 55.2
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 9.6e-128 461.5 618 44.7
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.6e-127 460.7 620 44.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-127 460.3 574 46.3
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 4.7e-127 459.1 497 49.1
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 6.2e-127 458.8 673 44.3
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-126 458.0 581 45.3
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.1e-126 458.0 581 45.8
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 9.9e-125 451.4 474 51.3
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.3e-124 451.1 572 45.3
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.6e-117 426.8 564 44.0
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.9e-115 420.6 305 70.8
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.9e-113 412.9 473 49.0
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.2e-109 401.4 605 42.8
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.3e-108 397.9 507 46.7
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.2e-106 391.3 575 40.9
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 6.7e-105 385.6 588 40.8
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 6.7e-105 385.6 569 43.8
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 6.2e-103 379.0 572 39.9
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 6.9e-102 375.6 596 39.3
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 4.2e-99 366.3 330 58.8
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 9.6e-96 355.1 505 41.0
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.2e-95 352.4 343 55.7
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.4e-94 351.3 468 45.1
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.4e-91 341.3 350 52.6
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 3.2e-91 340.1 460 46.5
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 7.9e-90 335.5 376 47.6
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 5.1e-89 332.8 499 38.5
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.9e-88 330.9 649 35.9
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 4.8e-87 326.2 466 39.9
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.5e-84 315.8 355 49.3
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 9.4e-83 312.0 434 38.2
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 6.3e-79 299.3 487 36.6
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 6.3e-79 299.3 326 54.6
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 4.2e-75 286.6 242 59.9
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.6e-74 284.6 325 48.3
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.0e-69 267.7 261 50.6
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 8.0e-66 255.8 268 53.0
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 6.7e-65 252.7 242 55.4
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 8.8e-65 252.3 315 43.8
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 3.1e-62 243.8 312 45.2
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 4.5e-61 240.0 280 48.9
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 2.5e-59 234.2 274 49.3
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 6.1e-58 229.6 244 47.5
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 8.3e-55 219.2 250 46.8
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 5.0e-52 209.9 133 71.4
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.9e-51 208.0 239 50.2
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 4.2e-51 206.8 165 61.8
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.2e-50 205.3 235 49.4
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.0e-49 202.2 180 58.9
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.5e-45 186.8 237 45.1
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.6e-43 179.9 349 35.2
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 2.1e-42 177.9 232 47.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 2.6e-40 171.0 380 37.4
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 4.9e-39 166.8 204 47.1
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.0e-37 161.4 160 51.9
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.5e-37 160.6 259 45.2
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.8e-32 143.3 168 46.4
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-31 141.7 184 44.0
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 1.1e-30 139.0 186 46.8
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-30 138.3 184 43.5
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.4e-30 137.9 184 43.5
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 7.0e-30 136.3 623 22.5
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 9.2e-30 136.0 142 49.3
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-29 134.8 184 42.9
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-29 134.8 184 42.9
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-29 134.8 184 42.9
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.7e-29 134.4 103 65.0
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 1.0e-28 132.5 101 68.3
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-28 131.7 103 64.1
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-27 128.3 98 64.3
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 5.2e-25 120.2 93 60.2
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 2.0e-24 118.2 128 50.8
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 7.5e-24 116.3 193 36.8
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.7e-23 115.2 239 32.2
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-23 115.2 109 53.2
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 4.9e-23 113.6 226 38.9
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.5e-19 102.1 171 38.0
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 4.7e-18 97.1 125 42.4
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-17 95.5 83 57.8
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 6.8e-17 93.2 79 60.8
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 6.0e-13 80.1 69 52.2
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.5e-11 75.5 109 48.6
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.3e-11 74.3 45 71.1
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.2e-10 72.4 184 37.5
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 1.1e-09 69.3 113 44.2
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.0e-08 65.1 45 64.4
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.2e-06 57.8 191 35.1
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 4.2e-06 57.4 122 32.0
FAN15G1786 Fragaria x ananassa HOM05D003812 ORTHO05D004393 7.1e-06 56.6 41 58.5
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 7.1e-06 56.6 47 53.2


User provided reference genes

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