Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 2010.3 1047 100.0
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1906.3 1047 95.9
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1676.4 1053 84.6
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1667.5 1022 83.9
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1604.7 990 83.3
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1602.0 1018 81.3
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1576.2 1047 78.5
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1532.3 1020 78.6
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1522.7 1048 76.9
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1515.7 1050 75.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1514.2 1020 77.5
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1483.0 1023 76.2
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1331.6 1007 68.2
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1293.5 1018 65.8
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1289.6 1151 61.1
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1277.3 1019 65.3
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1270.0 1050 65.0
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1264.6 1022 65.5
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1264.2 1015 66.0
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1256.5 1025 64.2
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1251.5 1017 65.9
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1244.6 1052 63.6
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1240.7 992 65.5
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1236.1 1017 64.6
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1234.9 1028 63.8
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1234.2 1015 63.7
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1229.2 1017 63.6
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1227.2 992 64.2
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1224.9 1042 61.9
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1220.3 1026 62.6
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1216.8 1047 61.1
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1215.7 1032 61.9
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1209.1 1044 62.4
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1205.7 1037 62.5
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1200.7 1048 60.5
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1198.7 1016 61.2
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1198.0 1051 62.5
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1197.6 1016 61.6
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1196.8 1011 61.8
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1179.9 1043 58.9
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1177.2 1023 60.6
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1169.1 941 65.2
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1167.5 1022 60.1
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1159.1 1017 61.3
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1159.1 1048 58.9
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1156.7 1027 60.5
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1155.2 1017 61.0
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1152.5 1017 61.5
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1152.5 1043 58.8
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1143.6 969 62.2
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1143.6 1016 59.3
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1139.8 1022 58.1
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1137.9 1017 59.5
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1137.1 1021 58.8
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1135.6 1023 59.5
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1134.4 1006 59.7
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1116.3 1031 58.0
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1110.1 1019 59.3
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1109.0 1057 56.4
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1107.8 1034 57.4
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1102.8 1021 57.8
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1102.8 1025 58.9
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1098.2 1020 58.2
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1088.9 1010 59.1
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1086.2 1052 55.1
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1084.3 1064 55.5
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1083.2 1023 57.8
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1080.9 1024 56.2
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1079.3 1061 55.5
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1078.5 1016 57.5
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1077.4 1024 56.8
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 5.4e-310 1067.8 1062 54.8
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 3.9e-308 1061.6 1023 55.2
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 1.2e-306 1056.6 1062 54.7
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 2.4e-305 1052.4 1054 54.4
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 2.4e-305 1052.4 1054 54.4
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 5.2e-305 1051.2 1022 56.5
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 8.9e-305 1050.4 1048 55.0
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 1.7e-303 1046.2 1055 54.1
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 6.4e-303 1044.3 1055 54.0
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 2.3e-300 1035.8 1080 53.1
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 3.4e-296 1021.9 1021 54.1
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 8.4e-295 1017.3 1045 54.2
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 2.6e-288 995.7 1014 53.3
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 2.2e-287 992.6 567 88.2
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 7.4e-283 977.6 1176 49.0
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 9.7e-275 950.7 939 55.6
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 1.1e-273 947.2 757 64.3
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 8.5e-271 937.6 751 65.1
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.1e-270 937.2 751 65.1
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 5.1e-268 928.3 853 57.0
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.8e-266 922.5 745 65.0
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 3.3e-259 899.0 783 60.9
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 4.8e-258 895.2 752 62.5
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 2.0e-256 889.8 1015 50.8
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 8.0e-253 877.9 947 51.6
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.2e-218 763.5 1021 45.5
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 4.9e-218 762.3 647 60.3
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 4.1e-217 759.2 560 69.5
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.2e-192 677.9 645 55.3
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.1e-189 667.2 614 57.2
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 3.9e-183 646.4 1024 39.2
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.4e-172 611.3 897 41.7
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.3e-162 578.2 690 46.5
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 7.4e-158 562.4 928 38.1
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 3.7e-157 560.1 1002 38.9
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.3e-150 537.0 436 61.9
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 5.9e-139 499.6 648 46.6
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 1.0e-103 382.5 248 81.5
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 8.3e-93 346.3 248 72.6
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 2.4e-92 344.7 272 67.3
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.6e-90 336.3 318 54.4
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 7.3e-89 333.2 802 33.9
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.4e-79 302.4 745 31.4
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.4e-79 301.6 394 45.9
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 6.4e-77 293.5 200 74.0
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 1.9e-76 292.0 243 63.4
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-73 282.0 447 38.5
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 9.0e-71 273.1 204 67.2
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.1e-68 266.2 356 43.0
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.9e-65 255.4 243 60.1
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.9e-57 228.8 916 26.5
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 4.5e-54 217.6 251 51.0
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.2e-43 183.0 139 71.9
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 6.7e-42 177.2 280 43.6
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 3.8e-37 161.4 108 74.1
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 5.9e-30 137.5 86 81.4
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 4.1e-23 114.8 76 75.0
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.0e-18 98.6 67 73.1
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 5.2e-18 97.8 68 73.5
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.7e-16 92.8 63 61.9
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.6e-14 86.3 51 88.2
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.7e-13 82.8 294 25.9
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.2e-11 76.6 70 52.9
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 2.7e-11 75.5 353 26.1
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 1.7e-08 66.2 45 73.3
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 9.1e-07 60.5 73 43.8


User provided reference genes

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