Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1502.3 747 100.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1426.0 747 94.2
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1419.1 748 93.3
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1407.1 747 93.0
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1390.2 747 91.8
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1358.2 748 89.4
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1355.5 748 89.6
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1354.3 746 89.1
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1345.5 745 89.1
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1344.3 748 88.5
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1338.9 748 88.6
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1285.8 842 78.3
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1276.2 747 83.8
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1275.4 747 83.7
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1275.4 747 83.4
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1274.6 749 83.3
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1273.8 750 82.7
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 749 83.6
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 750 82.7
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 747 84.7
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1263.8 747 82.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1263.4 752 82.6
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1263.1 747 82.3
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1261.9 749 82.9
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1260.7 748 83.0
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 745 83.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 747 82.5
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 748 82.4
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1259.6 747 82.6
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1256.9 745 82.3
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 748 82.4
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 751 82.6
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 748 82.0
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 749 82.0
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1250.3 746 82.2
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 747 82.2
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 748 81.0
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 747 81.7
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 745 81.9
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 748 81.7
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 751 81.6
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 752 82.2
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1239.6 746 81.8
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 722 83.5
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 745 81.3
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 749 81.8
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 746 80.2
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1233.0 747 81.1
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 743 82.2
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 748 82.0
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 748 80.9
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1229.9 708 84.0
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 750 80.7
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1228.4 750 80.0
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 746 80.7
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 748 81.3
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 781 78.6
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 748 81.4
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1224.9 751 80.2
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1224.5 746 80.6
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 750 79.6
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 748 80.6
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 748 80.7
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 748 81.3
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 746 79.9
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 802 76.8
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 747 80.9
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 746 80.2
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1220.3 748 80.5
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 748 80.5
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 751 80.0
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 747 79.4
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 747 80.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 751 79.8
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 748 80.2
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 748 80.2
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 748 79.8
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 759 79.6
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 759 79.7
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 747 79.0
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 749 80.4
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 749 80.1
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 752 80.5
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 748 80.7
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 748 79.3
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 747 79.1
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 747 79.5
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 747 78.7
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 753 78.5
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 750 78.8
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1199.5 747 79.7
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1198.3 750 80.0
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 752 78.9
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 780 75.8
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 750 78.0
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 725 81.0
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 743 78.6
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 691 83.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1184.1 749 78.0
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1182.9 741 78.8
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1178.3 710 81.0
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 692 82.1
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1163.7 717 79.2
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1152.9 733 77.6
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1145.6 665 85.1
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1144.8 748 76.6
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1137.1 749 75.3
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1135.2 742 76.4
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1134.4 658 83.4
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1129.0 752 75.4
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1127.1 658 83.1
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1125.9 658 83.0
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1107.0 749 75.4
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1101.3 658 82.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1100.9 1055 56.6
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1087.8 733 73.5
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 7.5e-306 1053.5 749 72.2
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 2.8e-300 1035.0 623 81.9
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.6e-284 982.6 679 68.9
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 6.2e-284 980.7 676 70.1
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.0e-283 978.0 677 70.0
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.0e-283 978.0 677 70.0
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.4e-282 974.9 677 69.7
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.1e-280 969.9 695 68.3
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.0e-278 963.4 678 68.4
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 9.3e-264 913.7 598 77.8
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 3.7e-260 901.7 598 77.3
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 3.8e-249 865.1 679 61.9
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 2.7e-231 805.8 682 58.4
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.0e-221 773.1 698 56.6
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 4.5e-210 735.3 679 56.1
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 8.9e-206 721.1 676 60.5
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.0e-193 681.0 755 48.3
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.3e-172 610.9 361 83.7
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.2e-170 604.4 739 44.7
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 9.6e-160 568.2 322 88.2
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.8e-156 556.2 305 87.5
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 2.4e-142 510.4 301 85.0
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-135 488.0 301 82.1
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 7.2e-123 445.7 307 70.4
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.5e-116 422.5 294 69.4
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 7.7e-101 372.5 237 75.5
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.5e-93 347.1 300 60.7
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 2.3e-92 344.4 241 71.8
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.6e-91 339.7 300 59.0
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 7.3e-91 339.3 219 77.2
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 4.0e-89 333.6 224 74.6
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 5.1e-68 263.5 401 43.6
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 5.1e-68 263.5 172 70.9
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 8.1e-66 256.1 126 96.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 7.6e-64 249.6 175 72.0
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.2e-61 242.3 364 38.5
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 3.9e-60 237.3 260 52.3
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 7.3e-59 233.0 114 95.6
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 3.3e-51 207.6 141 76.6
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.0e-44 186.0 164 61.0
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.3e-42 179.1 102 80.4
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.2e-40 172.6 176 56.8
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.5e-35 155.6 122 66.4
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 1.9e-35 155.2 86 82.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 8.2e-34 149.8 142 55.6
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.1e-30 139.4 121 65.3
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 3.2e-30 137.9 83 81.9
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 6.1e-29 133.7 105 62.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 6.7e-28 130.2 143 53.1
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 6.3e-26 123.6 61 91.8
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 8.2e-26 123.2 143 53.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.0e-23 116.3 99 63.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 6.5e-23 113.6 220 30.5
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.2e-15 88.6 56 76.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 5.0e-15 87.4 50 78.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 2.6e-11 75.1 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-10 71.2 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 1.9e-06 58.9 35 74.3


User provided reference genes

Program Settings