Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.2e-29 132.5 68 100.0
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.2e-23 111.7 57 96.5
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 2.2e-23 111.7 57 96.5
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 2.2e-23 111.7 57 96.5
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 2.2e-23 111.7 57 96.5
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 2.2e-23 111.7 57 96.5
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 2.9e-23 111.3 57 94.7
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 2.9e-23 111.3 57 94.7
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.9e-23 111.3 57 94.7
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 2.9e-23 111.3 57 94.7
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 2.9e-23 111.3 57 94.7
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 2.9e-23 111.3 57 94.7
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 5.0e-23 110.5 56 98.2
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 6.5e-23 110.2 57 93.0
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 6.5e-23 110.2 57 93.0
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 6.5e-23 110.2 57 94.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 6.5e-23 110.2 57 94.7
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 6.5e-23 110.2 57 94.7
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 8.5e-23 109.8 57 93.0
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 8.5e-23 109.8 57 93.0
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 8.5e-23 109.8 57 93.0
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 8.5e-23 109.8 57 93.0
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.1e-22 109.4 57 93.0
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.5e-22 109.0 57 93.0
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.9e-22 108.6 57 93.0
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.9e-22 108.6 57 93.0
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.9e-22 108.6 57 93.0
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.9e-22 108.6 57 93.0
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.9e-22 108.6 57 91.2
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.9e-22 108.6 57 93.0
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 4.2e-22 107.5 57 93.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.2e-22 107.5 57 91.2
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 4.2e-22 107.5 57 91.2
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.2e-22 107.5 57 91.2
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.2e-22 107.5 57 91.2
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 91.2
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 93.0
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 93.0
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 93.0
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 93.0
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 93.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 91.2
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 91.2
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 93.0
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 5.5e-22 107.1 57 93.0
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.2e-22 106.7 57 89.5
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.2e-22 106.7 57 89.5
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 7.2e-22 106.7 57 89.5
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 7.2e-22 106.7 57 89.5
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 9.4e-22 106.3 57 91.2
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 9.4e-22 106.3 57 91.2
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 9.4e-22 106.3 57 91.2
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 9.4e-22 106.3 57 91.2
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 9.4e-22 106.3 57 91.2
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 1.2e-21 105.9 57 89.5
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.1e-21 105.1 57 91.2
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.1e-21 105.1 57 91.2
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.1e-21 105.1 57 91.2
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.1e-21 105.1 57 91.2
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 2.1e-21 105.1 57 89.5
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.1e-21 105.1 57 87.7
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.7e-21 104.8 57 87.7
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.7e-21 104.8 57 91.2
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 3.6e-21 104.4 57 87.7
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 3.6e-21 104.4 57 87.7
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 3.6e-21 104.4 57 89.5
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 4.7e-21 104.0 57 89.5
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.1e-21 103.6 57 87.7
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.0e-20 102.8 57 87.7
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.0e-20 102.8 57 91.2
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.4e-20 102.4 57 86.0
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.4e-20 102.4 57 87.7
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.4e-20 102.4 57 86.0
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.3e-20 101.7 57 89.5
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.3e-20 101.7 57 84.2
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 3.0e-20 101.3 57 84.2
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 3.0e-20 101.3 57 86.0
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.0e-20 101.3 57 82.5
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 86.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 86.0
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 84.2
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 84.2
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 84.2
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 84.2
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 84.2
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 84.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 4.0e-20 100.9 57 84.2
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.0e-20 100.9 56 85.7
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 5.2e-20 100.5 57 84.2
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 6.8e-20 100.1 57 82.5
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 6.8e-20 100.1 57 84.2
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 8.8e-20 99.8 57 82.5
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 8.8e-20 99.8 57 82.5
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 8.8e-20 99.8 57 84.2
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 8.8e-20 99.8 62 77.4
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 8.8e-20 99.8 56 85.7
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 1.2e-19 99.4 57 82.5
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.5e-19 99.0 57 80.7
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 2.0e-19 98.6 57 82.5
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.0e-19 98.6 57 80.7
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 2.0e-19 98.6 57 82.5
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.0e-19 98.6 57 82.5
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.6e-19 98.2 57 80.7
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.6e-19 98.2 57 80.7
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.6e-19 98.2 57 82.5
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 4.4e-19 97.4 57 78.9
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 4.4e-19 97.4 57 78.9
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 4.4e-19 97.4 57 80.7
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 4.4e-19 97.4 57 78.9
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 4.4e-19 97.4 57 80.7
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 4.4e-19 97.4 57 78.9
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 5.7e-19 97.1 57 78.9
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 7.5e-19 96.7 57 80.7
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 7.5e-19 96.7 57 80.7
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.3e-18 95.9 56 85.7
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.3e-18 95.9 56 85.7
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.7e-18 95.5 56 80.4
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.2e-18 95.1 57 78.9
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.8e-18 94.7 57 78.9
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 3.7e-18 94.4 57 78.9
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 3.7e-18 94.4 57 78.9
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 4.8e-18 94.0 57 77.2
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.4e-17 92.4 57 73.7
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 2.4e-17 91.7 57 77.2
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.4e-17 91.7 91 59.3
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 3.1e-17 91.3 54 75.9
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 9.1e-17 89.7 57 68.4
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 2.0e-16 88.6 57 78.9
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 4.5e-16 87.4 57 66.7
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 7.7e-16 86.7 57 64.9
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 6.5e-15 83.6 57 64.9
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 8.5e-15 83.2 46 84.8
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 1.2e-13 79.3 57 56.1
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 9.1e-09 63.2 65 46.2
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 2.0e-08 62.0 31 93.5
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 5.9e-08 60.5 31 87.1
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.7e-07 58.9 29 93.1
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 1.9e-06 55.5 30 83.3
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 2.5e-06 55.1 31 77.4
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 7.2e-06 53.5 49 49.0


User provided reference genes

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