Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.4e-284 981.5 496 100.0
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.1e-252 876.3 501 89.6
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.9e-244 849.0 479 89.8
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 7.4e-233 810.4 508 82.1
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.8e-232 808.5 497 82.9
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 4.2e-228 794.7 503 79.1
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 6.7e-226 787.3 500 79.8
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.5e-222 776.2 504 79.6
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 5.3e-215 751.1 515 74.8
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 8.5e-213 743.8 524 73.1
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.1e-199 698.7 477 74.6
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 5.2e-194 681.4 500 69.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 8.8e-194 680.6 497 68.8
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 3.4e-193 678.7 476 70.8
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.5e-193 677.6 497 68.6
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.8e-193 677.2 497 68.4
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 2.8e-192 675.6 497 68.4
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.8e-192 675.6 497 68.4
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 6.3e-192 674.5 478 71.1
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.1e-191 673.7 494 68.6
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.4e-191 673.3 476 70.8
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.2e-190 670.2 495 68.5
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 3.5e-190 668.7 494 69.6
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 7.7e-190 667.5 505 68.1
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.2e-189 666.0 494 67.8
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.8e-189 665.2 505 68.1
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 9.5e-188 660.6 523 65.8
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 9.5e-188 660.6 498 68.1
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.6e-187 658.7 500 67.4
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.3e-186 656.0 519 66.3
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 3.0e-186 655.6 505 66.7
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 4.0e-186 655.2 473 70.8
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 5.2e-186 654.8 480 69.6
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.8e-186 654.4 483 70.2
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 6.8e-186 654.4 483 68.3
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.0e-185 652.9 507 67.9
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 9.8e-185 650.6 497 67.8
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 1.7e-184 649.8 496 66.1
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 4.1e-183 645.2 500 65.2
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.6e-182 643.3 498 68.1
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 3.5e-182 642.1 500 65.2
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 7.7e-182 641.0 501 66.1
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 7.7e-182 641.0 503 67.0
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.8e-181 638.6 500 64.6
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.6e-181 637.9 513 65.1
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.1e-180 637.1 477 68.1
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 5.6e-180 634.8 499 66.1
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 5.6e-180 634.8 508 62.8
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.8e-178 629.8 491 66.6
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.5e-177 626.7 499 62.9
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.6e-177 625.9 487 65.3
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.6e-177 625.9 499 64.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 4.4e-177 625.2 482 66.6
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 9.8e-177 624.0 484 66.3
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.9e-176 622.5 479 67.2
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 8.3e-176 620.9 479 65.6
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 3.2e-175 619.0 487 66.1
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.1e-175 618.6 462 66.9
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.2e-174 617.1 356 88.5
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 4.6e-174 615.1 483 62.9
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 3.0e-173 612.5 483 65.4
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 3.0e-173 612.5 483 63.1
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 8.6e-173 610.9 480 64.8
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 5.6e-172 608.2 498 64.5
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.0e-170 604.0 500 62.0
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.5e-169 600.1 533 59.3
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 5.8e-169 598.2 499 63.5
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 2.9e-168 595.9 478 62.8
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.9e-167 593.2 512 60.0
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 4.1e-167 592.0 496 60.5
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 7.0e-167 591.3 460 63.0
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.0e-166 588.2 432 69.4
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 2.3e-165 586.3 480 61.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 2.3e-165 586.3 485 61.0
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 4.3e-164 582.0 500 59.4
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 2.1e-163 579.7 452 63.7
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.6e-163 578.9 476 63.4
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 6.2e-163 578.2 455 62.4
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 6.2e-163 578.2 455 62.4
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 8.1e-163 577.8 481 60.1
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 8.1e-163 577.8 481 60.1
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 2.3e-162 576.2 480 60.2
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.3e-162 576.2 480 59.6
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 3.1e-162 575.9 469 61.0
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 3.1e-162 575.9 539 56.6
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 4.0e-162 575.5 465 61.3
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 7.5e-161 571.2 492 61.4
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 9.8e-161 570.9 533 57.0
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 8.9e-154 547.7 434 64.1
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 2.2e-152 543.1 505 54.7
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.4e-151 539.7 434 63.1
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 3.2e-151 539.3 503 58.4
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 4.6e-150 535.4 481 57.8
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.5e-148 530.4 384 68.8
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.3e-148 528.9 465 58.9
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.9e-146 521.2 496 57.3
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 9.9e-145 517.7 547 52.5
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.4e-143 513.8 401 66.6
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.9e-140 503.4 412 60.4
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 1.2e-137 494.2 462 56.5
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.6e-134 482.3 476 56.7
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.1e-131 473.4 494 54.9
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.3e-123 447.6 479 49.9
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 8.7e-117 424.9 451 48.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 1.1e-114 417.9 266 77.4
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.6e-102 376.3 229 79.0
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.3e-91 339.0 240 66.7
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.3e-91 339.0 240 66.7
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.2e-89 334.7 200 79.5
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.6e-89 334.3 267 63.3
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 3.5e-89 333.2 201 78.6
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 3.6e-86 323.2 302 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.6e-78 297.7 329 47.4
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 2.3e-77 293.9 302 48.3
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 3.7e-75 286.6 326 44.8
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.1e-71 275.0 216 64.8
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.8e-70 270.4 236 61.0
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 2.8e-70 270.4 173 74.6
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 1.8e-69 267.7 188 68.6
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.3e-69 267.3 226 64.2
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 4.0e-69 266.5 269 56.1
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.4e-66 256.1 231 59.7
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 4.5e-65 253.1 178 71.3
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.6e-64 249.2 259 49.4
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 6.2e-54 216.1 177 60.5
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.7e-51 208.0 162 61.1
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 7.0e-50 202.6 166 61.4
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 6.0e-41 172.9 439 27.3
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.5e-36 158.3 492 29.1
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-34 151.8 171 53.2
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 4.3e-31 140.2 178 44.9
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-29 134.8 240 40.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.0e-25 119.8 120 55.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 2.3e-24 117.9 148 45.3
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 8.1e-22 109.4 54 94.4
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 4.9e-19 100.1 278 30.2
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.9e-19 100.1 61 77.0
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.2e-18 97.1 107 48.6
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 4.3e-15 87.0 153 37.3
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 4.5e-12 77.0 150 35.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.3e-11 75.5 52 65.4
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-09 68.6 66 53.0
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 6.0e-09 66.6 49 71.4
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.2e-06 56.6 93 43.0


User provided reference genes

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