Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 6.4e-57 223.8 107 100.0
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 9.2e-40 166.8 86 94.2
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 6.0e-39 164.1 86 90.7
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 2.3e-38 162.2 86 90.7
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 3.0e-38 161.8 86 90.7
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 5.1e-38 161.0 86 89.5
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.5e-37 159.5 86 88.4
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.5e-37 159.5 83 92.8
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.9e-37 159.1 86 88.4
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.6e-36 156.0 86 88.4
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.6e-36 156.0 86 88.4
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.8e-36 155.2 86 88.4
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 2.8e-36 155.2 86 87.2
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.8e-36 155.2 86 87.2
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.6e-36 154.8 85 88.2
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 3.6e-36 154.8 85 88.2
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.7e-36 154.5 86 86.0
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.7e-36 154.5 86 86.0
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 4.7e-36 154.5 86 86.0
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 4.7e-36 154.5 86 86.0
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 6.2e-36 154.1 86 88.4
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.4e-35 152.9 86 86.0
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.4e-35 152.9 85 85.9
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.4e-35 152.1 86 86.0
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.4e-35 152.1 86 83.7
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 2.4e-35 152.1 85 87.1
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 4.0e-35 151.4 86 84.9
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 6.9e-35 150.6 86 83.7
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 6.9e-35 150.6 86 84.9
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.2e-34 149.8 86 84.9
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.2e-34 149.8 86 84.9
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.2e-34 149.8 86 83.7
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.6e-34 148.7 86 84.9
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.6e-34 148.7 86 84.9
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 3.4e-34 148.3 86 83.7
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.4e-34 148.3 86 84.9
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 5.8e-34 147.5 86 83.7
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 5.8e-34 147.5 86 82.6
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.6e-34 147.1 86 82.6
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 7.6e-34 147.1 85 83.5
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.3e-33 146.4 86 82.6
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.3e-33 146.4 85 83.5
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.7e-33 146.0 85 83.5
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 2.9e-33 145.2 85 81.2
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 3.8e-33 144.8 85 82.4
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 6.4e-33 144.1 86 81.4
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 6.4e-33 144.1 85 82.4
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.4e-33 144.1 86 81.4
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 8.4e-33 143.7 86 82.6
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.1e-32 143.3 86 82.6
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.1e-32 143.3 86 80.2
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 1.1e-32 143.3 86 82.6
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.1e-32 143.3 86 81.4
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.1e-32 143.3 86 81.4
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 2.4e-32 142.1 86 79.1
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.4e-32 142.1 86 82.6
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 3.2e-32 141.7 84 81.0
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 3.2e-32 141.7 86 77.9
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 5.4e-32 141.0 86 76.7
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 5.4e-32 141.0 86 76.7
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 5.4e-32 141.0 86 80.2
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 5.4e-32 141.0 86 79.1
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 7.1e-32 140.6 83 79.5
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 9.3e-32 140.2 86 80.2
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 9.3e-32 140.2 86 79.1
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 9.3e-32 140.2 86 80.2
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.3e-32 140.2 86 81.4
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.3e-32 140.2 87 81.6
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.3e-32 140.2 87 81.6
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.2e-31 139.8 86 80.2
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 1.2e-31 139.8 86 80.2
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.6e-31 139.4 86 79.1
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 2.1e-31 139.0 86 76.7
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 2.1e-31 139.0 86 80.2
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.1e-31 139.0 86 79.1
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 2.1e-31 139.0 86 80.2
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 2.1e-31 139.0 86 79.1
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.1e-31 139.0 86 77.9
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 2.7e-31 138.7 86 81.4
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.7e-31 138.7 86 81.4
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 3.5e-31 138.3 86 76.7
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 3.5e-31 138.3 86 76.7
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.5e-31 138.3 86 81.4
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.5e-31 138.3 86 81.4
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 3.5e-31 138.3 79 83.5
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 3.5e-31 138.3 85 78.8
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 4.6e-31 137.9 80 85.0
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.6e-31 137.9 86 76.7
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 4.6e-31 137.9 86 77.9
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-31 137.9 86 81.4
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-31 137.9 86 81.4
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-31 137.9 86 81.4
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 4.6e-31 137.9 86 76.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.6e-31 137.9 86 80.2
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 4.6e-31 137.9 82 80.5
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 4.6e-31 137.9 86 77.9
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 7.8e-31 137.1 86 76.7
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 7.8e-31 137.1 86 75.6
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 7.8e-31 137.1 86 76.7
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.3e-30 136.3 86 76.7
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.3e-30 136.3 85 78.8
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.7e-30 136.0 86 74.4
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.7e-30 136.0 86 75.6
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.7e-30 136.0 86 79.1
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.3e-30 135.6 86 76.7
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.3e-30 135.6 86 76.7
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 2.3e-30 135.6 83 79.5
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 3.0e-30 135.2 86 79.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 3.9e-30 134.8 86 75.6
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 3.9e-30 134.8 85 77.6
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 3.9e-30 134.8 86 75.6
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.9e-30 134.8 86 80.2
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 3.9e-30 134.8 89 75.3
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 5.1e-30 134.4 86 75.6
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 5.1e-30 134.4 86 74.4
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.1e-30 134.4 85 76.5
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 5.1e-30 134.4 86 75.6
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 6.6e-30 134.0 86 75.6
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.7e-30 133.7 86 75.6
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 8.7e-30 133.7 86 76.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.5e-29 132.9 86 79.1
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 3.3e-29 131.7 86 80.2
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 7.3e-29 130.6 86 73.3
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 9.6e-29 130.2 86 73.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.3e-28 129.8 86 76.7
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.1e-28 129.0 86 72.1
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.1e-28 129.0 86 72.1
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.6e-28 128.3 80 77.5
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 4.8e-28 127.9 86 72.1
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 6.2e-28 127.5 86 72.1
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.1e-27 126.7 78 82.1
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.8e-27 125.9 83 74.7
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.5e-26 122.9 86 69.8
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 2.9e-25 118.6 86 68.6
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.8e-22 109.4 65 81.5
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.3e-22 109.0 86 67.4
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 3.0e-22 108.6 106 48.1
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.5e-21 106.3 86 61.6
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.3e-21 105.1 78 64.1
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 5.6e-21 104.4 106 47.2
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.8e-19 99.4 82 58.5
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.4e-19 99.0 69 69.6
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 5.3e-19 97.8 84 60.7
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 6.9e-19 97.4 83 57.8
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 6.9e-19 97.4 85 57.6
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.2e-18 96.7 81 55.6
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 2.0e-18 95.9 71 67.6
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 2.1e-15 85.9 71 57.7
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 3.9e-14 81.6 77 53.2
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 8.7e-14 80.5 82 52.4
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 8.7e-14 80.5 77 51.9
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 2.7e-07 58.9 92 39.1


User provided reference genes

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