Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16922_v3 Cicer arietinum L. HOM05D007422 ORTHO05D009333 2.4e-60 235.3 122 100.0
Medtr3g095670 Medicago truncatula HOM05D007422 ORTHO05D009333 1.4e-52 209.5 125 88.0
TPR.G18719 Trifolium pratense HOM05D007422 ORTHO05D009333 5.4e-52 207.6 125 88.0
Glyma.04G215300 Glycine max HOM05D007422 ORTHO05D009333 9.2e-52 206.8 126 86.5
Psat5g063240 Pisum sativum HOM05D007422 ORTHO05D009333 7.8e-51 203.8 125 85.6
Phvul.009G147900 Phaseolus vulgaris HOM05D007422 ORTHO05D009333 1.3e-50 203.0 125 84.0
VMungo1309G2444 Vigna mungo HOM05D007422 ORTHO05D009333 6.6e-50 200.7 125 84.0
Glyma.06G150900 Glycine max HOM05D007422 ORTHO05D009333 8.6e-50 200.3 125 84.8
Lj1g0018544 Lotus japonicus HOM05D007422 ORTHO05D009333 1.9e-49 199.1 125 84.0
Lalb_Chr08g0238531 Lupinus albus HOM05D007422 ORTHO05D009333 9.5e-49 196.8 125 82.4
arahy.Tifrunner.gnm1.ann1.DL1AJH Arachis hypogaea HOM05D007422 ORTHO05D009333 9.8e-46 186.8 126 77.8
arahy.Tifrunner.gnm1.ann1.PIK6SY Arachis hypogaea HOM05D007422 ORTHO05D009333 3.7e-45 184.9 126 78.6
CiPaw.04G085200 Carya illinoinensis HOM05D007422 ORTHO05D009333 7.3e-41 170.6 129 72.9
Potri.005G056500 Populus trichocarpa HOM05D007422 ORTHO05D009333 2.8e-40 168.7 130 73.1
Cfa002851 Carpinus fangiana HOM05D007422 ORTHO05D009333 1.1e-39 166.8 129 72.1
RcHm_v2.0_Chr2g0118261 Rosa chinensis HOM05D007422 ORTHO05D009333 4.0e-39 164.9 127 70.9
Manes.12G151600 Manihot esculenta HOM05D007422 ORTHO05D009333 5.2e-39 164.5 129 72.9
Manes.12G151400 Manihot esculenta HOM05D007422 ORTHO05D009333 8.9e-39 163.7 129 71.3
Duzib264G1170 Durio zibethinus HOM05D007422 ORTHO05D009333 3.4e-38 161.8 125 72.0
Gohir.D04G029700 Gossypium hirsutum HOM05D007422 ORTHO05D009333 3.4e-38 161.8 125 71.2
Gorai.012G032800 Gossypium raimondii HOM05D007422 ORTHO05D009333 3.4e-38 161.8 125 71.2
Thecc.01G123800 Theobroma cacao HOM05D007422 ORTHO05D009333 3.4e-38 161.8 125 72.8
Prupe.6G165000 Prunus persica HOM05D007422 ORTHO05D009333 5.8e-38 161.0 127 71.7
QL06p030244 Quercus lobata HOM05D007422 ORTHO05D009333 1.3e-37 159.8 140 67.9
COL.COLO4_21895 Corchorus olitorius HOM05D007422 ORTHO05D009333 1.7e-37 159.5 126 70.6
CANSAT01G0526 Cannabis sativa HOM05D007422 ORTHO05D009333 2.9e-37 158.7 127 69.3
vmacro18659 Vaccinium macrocarpon HOM05D007422 ORTHO05D009333 2.9e-37 158.7 130 67.7
Gohir.A05G386900 Gossypium hirsutum HOM05D007422 ORTHO05D009333 3.7e-37 158.3 125 70.4
CAN.G900.53 Capsicum annuum HOM05D007422 ORTHO05D009333 6.4e-37 157.5 126 65.9
Dinv18494 Davidia involucrata HOM05D007422 ORTHO05D009333 1.1e-36 156.8 126 67.5
AT1G49170 Arabidopsis thaliana HOM05D007422 ORTHO05D009333 1.4e-36 156.4 124 68.5
MD05G1015900 Malus domestica HOM05D007422 ORTHO05D009333 1.4e-36 156.4 126 68.3
Cc07_g17580 Coffea canephora HOM05D007422 ORTHO05D009333 4.1e-36 154.8 128 67.2
Atru.chr4.503 Acer truncatum HOM05D007422 ORTHO05D009333 5.4e-36 154.5 129 68.2
AL1G56040 Arabidopsis lyrata HOM05D007422 ORTHO05D009333 5.4e-36 154.5 124 68.5
Hund04464 Selenicereus undatus HOM05D007422 ORTHO05D009333 5.4e-36 154.5 127 69.3
MSTRG.2680 Avicennia marina HOM05D007422 ORTHO05D009333 1.6e-35 152.9 126 64.3
A05p20740 Brassica napus HOM05D007422 ORTHO05D009333 2.7e-35 152.1 129 67.4
BraA05t20982Z Brassica rapa HOM05D007422 ORTHO05D009333 2.7e-35 152.1 129 67.4
CARHR039170 Cardamine hirsuta HOM05D007422 ORTHO05D009333 2.7e-35 152.1 127 67.7
Solyc03g078350.3 Solanum lycopersicum HOM05D007422 ORTHO05D009333 2.7e-35 152.1 127 63.8
PGSC0003DMG400018421 Solanum tuberosum HOM05D007422 ORTHO05D009333 2.7e-35 152.1 130 63.8
Ah.02g122030 Amaranthus hybridus HOM05D007422 ORTHO05D009333 3.5e-35 151.8 124 67.7
Sabra05G0048800 Salix brachista HOM05D007422 ORTHO05D009333 3.5e-35 151.8 138 63.0
BolC5t32228H Brassica oleracea HOM05D007422 ORTHO05D009333 4.6e-35 151.4 127 66.1
PGR102G2924 Punica granatum HOM05D007422 ORTHO05D009333 4.6e-35 151.4 124 67.7
Ciclev10026766m.g Citrus clementina HOM05D007422 ORTHO05D009333 7.8e-35 150.6 126 65.9
Cpa.g.sc42.105 Carica papaya HOM05D007422 ORTHO05D009333 1.0e-34 150.2 129 64.3
Thhalv10011860m.g Eutrema salsugineum HOM05D007422 ORTHO05D009333 1.0e-34 150.2 127 66.9
Sopen03g021130 Solanum pennellii HOM05D007422 ORTHO05D009333 1.0e-34 150.2 127 63.0
THA.LOC104821861 Tarenaya hassleriana HOM05D007422 ORTHO05D009333 1.0e-34 150.2 127 66.1
HanXRQChr17g0559811 Helianthus annuus HOM05D007422 ORTHO05D009333 1.3e-34 149.8 122 65.6
Sp1g36060 Schrenkiella parvula HOM05D007422 ORTHO05D009333 1.3e-34 149.8 129 66.7
BcaC05g27531 Brassica carinata HOM05D007422 ORTHO05D009333 1.7e-34 149.4 127 65.4
C05p35090 Brassica napus HOM05D007422 ORTHO05D009333 1.7e-34 149.4 127 65.4
Carub.0001s3836 Capsella rubella HOM05D007422 ORTHO05D009333 1.7e-34 149.4 127 66.1
TAR628G0864 Trochodendron aralioides HOM05D007422 ORTHO05D009333 3.0e-34 148.7 125 66.4
Nitab4.5_0006443g0040 Nicotiana tabacum HOM05D007422 ORTHO05D009333 5.1e-34 147.9 127 63.8
Nn1g06132 Nelumbo nucifera HOM05D007422 ORTHO05D009333 1.5e-33 146.4 120 66.7
MELO3C023262.2 Cucumis melo HOM05D007422 ORTHO05D009333 1.9e-33 146.0 124 66.9
Migut.H01100 Erythranthe guttata HOM05D007422 ORTHO05D009333 7.3e-33 144.1 126 61.9
Peaxi162Scf00583g00227 Petunia axillaris HOM05D007422 ORTHO05D009333 7.3e-33 144.1 122 62.3
TWI75G1659 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 1.2e-32 143.3 124 64.5
Oeu039761.1 Olea europaea HOM05D007422 ORTHO05D009333 2.1e-32 142.5 127 61.4
Aa31LG10G5060 Aethionema arabicum HOM05D007422 ORTHO05D009333 3.6e-32 141.7 130 62.3
Aqoxy5G02143 Aquilegia oxysepala HOM05D007422 ORTHO05D009333 3.6e-32 141.7 133 61.7
TWI31G1366 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 3.6e-32 141.7 124 62.1
Lsat_1_v5_gn_8_142161 Lactuca sativa HOM05D007422 ORTHO05D009333 6.2e-32 141.0 121 62.8
PSO170G3514 Papaver somniferum HOM05D007422 ORTHO05D009333 8.1e-32 140.6 129 60.5
Sc03g0005110 Simmondsia chinensis HOM05D007422 ORTHO05D009333 1.4e-31 139.8 147 58.5
SGA_v2.0_scaffold137G35131 Striga asiatica HOM05D007422 ORTHO05D009333 3.1e-31 138.7 126 60.3
SEGI_34968 Sequoiadendron giganteum HOM05D007422 ORTHO05D009333 2.6e-30 135.6 113 61.9
CDE08G0547 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 3.4e-30 135.2 124 58.9
DCAR_031485 Daucus carota HOM05D007422 ORTHO05D009333 3.4e-30 135.2 120 60.8
MBI17_g11164_MAGBIO Magnolia biondii HOM05D007422 ORTHO05D009333 3.4e-30 135.2 104 67.3
PSO017G6029 Papaver somniferum HOM05D007422 ORTHO05D009333 7.6e-30 134.0 131 58.0
Zm00001eb076010 Zea mays HOM05D007422 ORTHO05D009333 1.3e-29 133.3 124 60.5
Os04g0686300 Oryza sativa ssp. japonica HOM05D007422 ORTHO05D009333 1.1e-28 130.2 124 59.7
CDE06G1708 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 1.9e-28 129.4 124 55.6
ECA233G2273 Erigeron canadensis HOM05D002719 ORTHO05D002938 1.6e-27 126.3 104 65.4
unitig_60.g25621 Utricularia gibba HOM05D007422 ORTHO05D009333 2.7e-27 125.6 121 55.4
ATR0772G041 Amborella trichopoda HOM05D007422 ORTHO05D009333 1.3e-26 123.2 124 54.8
Prupe.6G164500 Prunus persica HOM05D007422 ORTHO05D009333 5.1e-26 121.3 127 58.3
FvH4_1g23360 Fragaria vesca HOM05D007422 ORTHO05D009333 1.5e-25 119.8 124 57.3
HPP92_006817 Vanilla planifolia HOM05D007422 ORTHO05D009333 1.5e-25 119.8 130 55.4
FAN19G2306 Fragaria x ananassa HOM05D007422 ORTHO05D009333 5.6e-25 117.9 125 56.0
BcaB02g11281 Brassica carinata HOM05D007422 ORTHO05D009333 1.6e-24 116.3 127 57.5
EL10Ac6g15266 Beta vulgaris HOM05D007422 ORTHO05D009333 2.8e-24 115.5 76 77.6
GSVIVG01026559001 Vitis vinifera HOM05D007422 ORTHO05D009333 2.4e-23 112.5 84 72.6
Eucgr.H04923 Eucalyptus grandis HOM05D007422 ORTHO05D009333 4.4e-22 108.2 69 78.3
CsaV3_2G018110 Cucumis sativus L. HOM05D007422 ORTHO05D009333 1.7e-21 106.3 68 77.9
Haze_25151 Corylus avellana HOM05D007422 ORTHO05D009333 4.9e-21 104.8 89 66.3
Dinv05702 Davidia involucrata HOM05D007422 ORTHO05D009333 1.4e-20 103.2 66 80.3
AUR62017925 Chenopodium quinoa HOM05D007422 ORTHO05D009333 3.5e-19 98.6 83 68.7
AUR62003614 Chenopodium quinoa HOM05D007422 ORTHO05D009333 1.0e-18 97.1 121 51.2
CSS0008685 Camellia sinensis var. sinensis HOM05D007422 ORTHO05D009333 3.0e-18 95.5 88 62.5
Mapoly0054s0054 Marchantia polymorpha HOM05D007422 ORTHO05D009333 3.0e-18 95.5 96 50.0
ClCG02G000660 Citrullus lanatus HOM05D007422 ORTHO05D009333 1.9e-17 92.8 86 64.0
BcaB02g11285 Brassica carinata HOM05D007422 ORTHO05D009333 3.4e-14 82.0 116 46.6
Sed0005171 Sechium edule HOM05D007422 ORTHO05D009333 2.4e-12 75.9 110 45.5
FAN23G3068 Fragaria x ananassa HOM05D007422 ORTHO05D009333 4.8e-08 61.6 45 71.1
Sabra05G0049000 Salix brachista HOM05D007422 ORTHO05D009333 1.4e-07 60.1 49 67.3
RcHm_v2.0_Chr2g0118341 Rosa chinensis HOM05D007422 ORTHO05D009333 1.2e-06 57.0 41 68.3
Pp3c13_2330 Physcomitrium patens HOM05D007422 ORTHO05D009333 1.5e-06 56.6 66 50.0
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 2.6e-06 55.8 105 36.2
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 2.6e-06 55.8 105 36.2
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 2.6e-06 55.8 105 36.2
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 2.6e-06 55.8 105 36.2
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 3.4e-06 55.5 105 36.2
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 3.4e-06 55.5 105 35.2
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 3.4e-06 55.5 105 35.2
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 3.4e-06 55.5 105 36.2
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 3.4e-06 55.5 41 70.7
ECA232G0809 Erigeron canadensis HOM05D006654 ORTHO05D008201 4.5e-06 55.1 105 35.2
Oeu044257.1 Olea europaea HOM05D006654 ORTHO05D008201 4.5e-06 55.1 70 40.0
MSTRG.4601 Avicennia marina HOM05D006654 ORTHO05D008201 5.8e-06 54.7 105 34.3
EL10As4g23406 Beta vulgaris HOM05D006654 ORTHO05D008201 5.8e-06 54.7 105 34.3
AUR62025924 Chenopodium quinoa HOM05D006654 ORTHO05D008201 5.8e-06 54.7 105 34.3
AUR62029635 Chenopodium quinoa HOM05D006654 ORTHO05D008201 5.8e-06 54.7 105 34.3
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 7.6e-06 54.3 105 34.3
Lsat_1_v5_gn_4_76920 Lactuca sativa HOM05D006654 ORTHO05D008201 7.6e-06 54.3 105 35.2
Oeu023486.1 Olea europaea HOM05D006654 ORTHO05D008201 7.6e-06 54.3 105 34.3
Lalb_Chr06g0164681 Lupinus albus HOM05D006654 ORTHO05D008201 1.0e-05 53.9 119 33.6


User provided reference genes

Program Settings