Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 3.1e-99 365.2 190 100.0
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 1.8e-94 349.4 193 94.8
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 1.8e-94 349.4 194 94.8
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 1.3e-92 343.2 191 90.6
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.4e-86 323.2 198 82.3
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 2.3e-86 322.4 193 85.5
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 1.2e-85 320.1 195 86.7
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 2.0e-85 319.3 196 84.2
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 7.5e-85 317.4 197 84.3
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 9.8e-85 317.0 192 84.4
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 2.2e-84 315.8 193 82.9
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 3.7e-84 315.1 194 80.4
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.9e-83 312.8 194 79.9
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 2.4e-83 312.4 194 79.9
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.4e-83 312.4 194 79.9
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.4e-83 312.4 194 79.9
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 4.1e-83 311.6 195 82.1
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 7.0e-83 310.8 194 79.4
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.2e-82 310.1 194 79.4
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 2.0e-82 309.3 199 81.4
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 2.3e-81 305.8 192 80.7
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 3.9e-81 305.1 191 80.1
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 3.9e-81 305.1 191 80.1
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 3.9e-81 305.1 191 80.1
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 6.6e-81 304.3 199 79.9
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 1.1e-80 303.5 196 78.1
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 1.5e-80 303.1 176 85.2
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 1.9e-80 302.8 195 80.0
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 2.5e-80 302.4 195 81.5
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 2.5e-80 302.4 194 78.4
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 3.3e-80 302.0 199 79.9
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 4.3e-80 301.6 195 78.5
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 5.6e-80 301.2 193 76.7
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 9.5e-80 300.4 192 79.2
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 9.5e-80 300.4 196 77.0
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 1.6e-79 299.7 196 77.6
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.6e-79 299.7 178 83.7
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 1.6e-79 299.7 196 79.1
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.6e-79 299.7 192 79.7
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 2.8e-79 298.9 201 78.6
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 4.7e-79 298.1 201 78.1
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 6.8e-78 294.3 191 79.1
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 6.8e-78 294.3 199 76.4
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.2e-77 293.5 192 78.1
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 1.2e-77 293.5 191 77.0
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 1.2e-77 293.5 191 77.0
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 1.5e-77 293.1 176 82.4
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 1.5e-77 293.1 176 80.7
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 2.0e-77 292.7 176 81.2
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 2.0e-77 292.7 196 76.0
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 2.0e-77 292.7 196 76.0
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 2.6e-77 292.4 177 80.2
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 1.3e-76 290.0 167 83.8
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 2.9e-76 288.9 193 75.1
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.9e-76 288.9 192 77.1
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 6.4e-76 287.7 197 73.1
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 6.4e-76 287.7 176 81.2
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 6.4e-76 287.7 176 81.2
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 6.4e-76 287.7 176 81.2
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 1.1e-75 287.0 195 77.4
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 1.9e-75 286.2 193 77.2
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 9.2e-75 283.9 192 74.0
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 9.2e-75 283.9 193 76.7
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 7.8e-74 280.8 197 71.6
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 1.0e-73 280.4 190 71.1
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 7.3e-72 274.2 191 73.3
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 9.5e-72 273.9 175 76.6
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 9.5e-72 273.9 193 73.6
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 8.1e-71 270.8 177 75.1
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 2.3e-70 269.2 173 75.7
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 2.6e-69 265.8 171 77.2
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 3.4e-69 265.4 206 68.0
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 5.8e-69 264.6 201 67.7
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 7.6e-69 264.2 191 71.2
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 1.3e-68 263.5 198 69.2
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 2.2e-68 262.7 201 68.2
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 2.2e-68 262.7 201 68.2
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 2.2e-68 262.7 201 68.2
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 2.2e-68 262.7 201 68.2
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 4.9e-68 261.5 206 67.0
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 6.4e-68 261.2 198 67.7
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 6.4e-68 261.2 198 67.7
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 1.1e-67 260.4 205 67.3
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 1.1e-67 260.4 205 67.3
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 1.4e-67 260.0 205 66.3
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 3.2e-67 258.8 194 71.6
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 4.1e-67 258.5 190 66.8
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 7.1e-67 257.7 176 70.5
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.2e-66 256.9 187 69.5
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.2e-66 256.9 187 69.5
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 1.6e-66 256.5 208 65.9
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.0e-65 253.8 198 68.7
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 4.0e-62 241.9 204 64.7
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.9e-62 240.7 175 69.7
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 3.4e-61 238.8 150 78.0
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 7.6e-61 237.7 147 76.9
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 3.8e-60 235.3 154 77.3
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 9.6e-56 220.7 157 70.1
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 9.3e-51 204.1 174 64.4
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 7.9e-50 201.1 175 56.6
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 1.4e-46 190.3 148 67.6
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.7e-44 183.3 173 52.6
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.7e-44 183.3 175 52.6
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 7.1e-43 177.9 106 80.2
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.3e-41 173.7 106 78.3
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 3.0e-41 172.6 178 48.9
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.4e-38 163.7 175 52.0
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 4.0e-38 162.2 99 78.8
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 3.7e-31 139.0 120 57.5
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.2e-31 137.9 173 46.8
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 3.0e-25 119.4 131 50.4
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 7.7e-21 104.8 63 81.0
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.1e-14 82.8 66 66.7
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 3.4e-13 79.3 51 72.5
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 8.8e-09 64.7 39 79.5
Lj2g0024286 Lotus japonicus HOM05D006880 ORTHO05D236304 5.3e-06 55.5 65 50.8
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.1e-06 54.7 33 72.7


User provided reference genes

Program Settings