Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16910_v3 Cicer arietinum L. HOM05D004055 ORTHO05D004795 1.6e-123 446.4 285 100.0
TPR.G18732 Trifolium pratense HOM05D004055 ORTHO05D004795 3.9e-101 372.1 318 66.7
Medtr3g095380 Medicago truncatula HOM05D004055 ORTHO05D004795 3.5e-94 349.0 319 66.8
VMungo1309G1914 Vigna mungo HOM05D004055 ORTHO05D004795 1.2e-86 323.9 318 58.2
Glyma.04G216700 Glycine max HOM05D004055 ORTHO05D004795 7.3e-84 314.7 318 58.2
Lj1g0026829 Lotus japonicus HOM05D004055 ORTHO05D004795 6.2e-83 311.6 319 61.4
Phvul.009G146900 Phaseolus vulgaris HOM05D004055 ORTHO05D004795 7.6e-81 304.7 319 58.9
Glyma.06G149200 Glycine max HOM05D004055 ORTHO05D004795 1.1e-79 300.8 320 59.4
Lalb_Chr08g0238691 Lupinus albus HOM05D004055 ORTHO05D004795 1.1e-76 290.8 329 53.5
arahy.Tifrunner.gnm1.ann1.F10EXU Arachis hypogaea HOM05D004055 ORTHO05D004795 2.8e-75 286.2 335 55.2
Psat5g064600 Pisum sativum HOM05D004055 ORTHO05D004795 1.7e-72 276.9 281 63.0
Lalb_Chr23g0272481 Lupinus albus HOM05D004055 ORTHO05D004795 1.2e-70 270.8 328 54.0
Lalb_Chr11g0068211 Lupinus albus HOM05D004055 ORTHO05D004795 1.3e-69 267.3 330 52.7
Thecc.01G135000 Theobroma cacao HOM05D004055 ORTHO05D004795 2.1e-67 260.0 321 52.0
COL.COLO4_21459 Corchorus olitorius HOM05D004055 ORTHO05D004795 9.0e-66 254.6 318 52.2
Gohir.D04G014600 Gossypium hirsutum HOM05D004055 ORTHO05D004795 9.9e-65 251.1 318 50.0
Gorai.012G017100 Gossypium raimondii HOM05D004055 ORTHO05D004795 9.9e-65 251.1 318 50.0
ClCG01G015720 Citrullus lanatus HOM05D004055 ORTHO05D004795 1.7e-64 250.4 326 49.7
Gohir.A05G401200 Gossypium hirsutum HOM05D004055 ORTHO05D004795 3.8e-64 249.2 318 49.7
CiPaw.03G129400 Carya illinoinensis HOM05D004055 ORTHO05D004795 6.4e-64 248.4 322 49.7
Thecc.10G166300 Theobroma cacao HOM05D004055 ORTHO05D004795 1.4e-63 247.3 317 51.1
MELO3C008024.2 Cucumis melo HOM05D004055 ORTHO05D004795 1.9e-63 246.9 326 49.7
Glyma.08G146000 Glycine max HOM05D004055 ORTHO05D004795 5.4e-63 245.4 317 49.8
TWI79G0735 Tripterygium wilfordii HOM05D004055 ORTHO05D004795 9.3e-63 244.6 322 49.4
TWI31G0449 Tripterygium wilfordii HOM05D004055 ORTHO05D004795 2.7e-62 243.0 322 48.8
arahy.Tifrunner.gnm1.ann1.W5F641 Arachis hypogaea HOM05D004055 ORTHO05D004795 1.3e-61 240.7 265 60.8
Sed0016858 Sechium edule HOM05D004055 ORTHO05D004795 2.3e-61 240.0 327 48.9
Gohir.A06G175700 Gossypium hirsutum HOM05D004055 ORTHO05D004795 6.7e-61 238.4 321 48.6
Prupe.6G180300 Prunus persica HOM05D004055 ORTHO05D004795 6.7e-61 238.4 317 49.8
Potri.019G003900 Populus trichocarpa HOM05D004055 ORTHO05D004795 8.7e-61 238.0 325 48.0
Gohir.D06G185400 Gossypium hirsutum HOM05D004055 ORTHO05D004795 1.1e-60 237.7 321 48.3
Gorai.010G216800 Gossypium raimondii HOM05D004055 ORTHO05D004795 1.1e-60 237.7 321 48.3
CiPaw.04G087200 Carya illinoinensis HOM05D004055 ORTHO05D004795 3.3e-60 236.1 319 47.0
Lj4g0015873 Lotus japonicus HOM05D004055 ORTHO05D004795 1.3e-59 234.2 318 49.1
CANSAT01G3086 Cannabis sativa HOM05D004055 ORTHO05D004795 4.8e-59 232.3 337 45.4
Duzib264G0984 Durio zibethinus HOM05D004055 ORTHO05D004795 4.8e-59 232.3 318 51.9
arahy.Tifrunner.gnm1.ann1.WFL6TQ Arachis hypogaea HOM05D004055 ORTHO05D004795 6.2e-59 231.9 320 46.6
Manes.13G082000 Manihot esculenta HOM05D004055 ORTHO05D004795 8.1e-59 231.5 332 53.0
Potri.001G307600 Populus trichocarpa HOM05D004055 ORTHO05D004795 1.8e-58 230.3 326 46.6
Glyma.05G187800 Glycine max HOM05D004055 ORTHO05D004795 3.1e-58 229.6 317 47.9
Ciclev10025964m.g Citrus clementina HOM05D004055 ORTHO05D004795 1.5e-57 227.3 321 47.4
MD15G1319400 Malus domestica HOM05D004055 ORTHO05D004795 2.6e-57 226.5 319 45.8
QL06p030904 Quercus lobata HOM05D004055 ORTHO05D004795 1.7e-56 223.8 319 50.5
Sabra16G0193500 Salix brachista HOM05D004055 ORTHO05D004795 3.8e-56 222.6 340 45.6
MD01G1024900 Malus domestica HOM05D004055 ORTHO05D004795 4.9e-56 222.2 317 53.0
RcHm_v2.0_Chr2g0119271 Rosa chinensis HOM05D004055 ORTHO05D004795 4.9e-56 222.2 322 48.8
Atru.chr4.588 Acer truncatum HOM05D004055 ORTHO05D004795 8.4e-56 221.5 327 45.6
COL.COLO4_35774 Corchorus olitorius HOM05D004055 ORTHO05D004795 1.1e-55 221.1 319 45.8
Sed0022459 Sechium edule HOM05D004055 ORTHO05D004795 1.4e-55 220.7 322 46.6
FvH4_1g23670 Fragaria vesca HOM05D004055 ORTHO05D004795 1.9e-55 220.3 328 47.9
arahy.Tifrunner.gnm1.ann1.GWIQ86 Arachis hypogaea HOM05D004055 ORTHO05D004795 5.5e-55 218.8 320 51.2
FAN28G2172 Fragaria x ananassa HOM05D004055 ORTHO05D004795 7.1e-55 218.4 328 45.1
FAN26G2960 Fragaria x ananassa HOM05D004055 ORTHO05D004795 9.3e-55 218.0 328 45.1
FAN19G0550 Fragaria x ananassa HOM05D004055 ORTHO05D004795 1.2e-54 217.6 322 48.1
Sabra19G0004100 Salix brachista HOM05D004055 ORTHO05D004795 1.6e-54 217.2 344 43.9
CsaV3_6G042000 Cucumis sativus L. HOM05D004055 ORTHO05D004795 1.3e-53 214.2 251 52.2
FAN23G0659 Fragaria x ananassa HOM05D004055 ORTHO05D004795 1.3e-53 214.2 328 47.0
PGR119G1730 Punica granatum HOM05D004055 ORTHO05D004795 3.0e-53 213.0 326 43.9
Gorai.009G296400 Gossypium raimondii HOM05D004055 ORTHO05D004795 2.5e-52 209.9 321 44.2
Manes.12G149500 Manihot esculenta HOM05D004055 ORTHO05D004795 1.3e-51 207.6 336 43.8
VMungo0251G0876 Vigna mungo HOM05D004055 ORTHO05D004795 4.8e-51 205.7 318 44.3
Duzib128G0998 Durio zibethinus HOM05D004055 ORTHO05D004795 6.9e-50 201.8 246 53.3
TAR625G1530 Trochodendron aralioides HOM05D004055 ORTHO05D004795 2.0e-49 200.3 324 43.5
TAR381G1437 Trochodendron aralioides HOM05D004055 ORTHO05D004795 3.4e-49 199.5 324 42.0
Lalb_Chr12g0203361 Lupinus albus HOM05D004055 ORTHO05D004795 4.5e-49 199.1 321 48.0
Carub.0006s0827 Capsella rubella HOM05D004055 ORTHO05D004795 5.8e-49 198.7 324 44.1
Actinidia09813 Actinidia chinensis HOM05D004055 ORTHO05D004795 1.3e-48 197.6 327 42.2
Eucgr.I00261 Eucalyptus grandis HOM05D004055 ORTHO05D004795 2.2e-48 196.8 321 43.6
CSS0019507 Camellia sinensis var. sinensis HOM05D004055 ORTHO05D004795 3.8e-48 196.1 339 46.9
Thhalv10013991m.g Eutrema salsugineum HOM05D004055 ORTHO05D004795 6.5e-48 195.3 319 45.8
HanXRQChr15g0495911 Helianthus annuus HOM05D004055 ORTHO05D004795 1.1e-47 194.5 322 40.7
AT5G09850 Arabidopsis thaliana HOM05D004055 ORTHO05D004795 1.4e-47 194.1 324 45.1
PSO541G1884 Papaver somniferum HOM05D004055 ORTHO05D004795 4.2e-47 192.6 342 40.4
GSVIVG01034541001 Vitis vinifera HOM05D004055 ORTHO05D004795 1.2e-46 191.0 322 41.3
Dinv14354 Davidia involucrata HOM05D004055 ORTHO05D004795 1.6e-46 190.7 252 48.4
Aa31LG3G17270 Aethionema arabicum HOM05D004055 ORTHO05D004795 2.7e-46 189.9 326 47.9
BraA03t09773Z Brassica rapa HOM05D004055 ORTHO05D004795 2.7e-46 189.9 327 48.0
PSO675G8047 Papaver somniferum HOM05D004055 ORTHO05D004795 3.5e-46 189.5 345 40.3
C03p04740 Brassica napus HOM05D004055 ORTHO05D004795 4.6e-46 189.1 327 41.0
BolC3t13008H Brassica oleracea HOM05D004055 ORTHO05D004795 4.6e-46 189.1 327 41.0
Phvul.002G268700 Phaseolus vulgaris HOM05D004055 ORTHO05D004795 7.9e-46 188.3 318 40.9
AL6G20260 Arabidopsis lyrata HOM05D004055 ORTHO05D004795 2.3e-45 186.8 325 45.2
A03p04290 Brassica napus HOM05D004055 ORTHO05D004795 6.7e-45 185.3 319 47.3
HanXRQChr09g0259611 Helianthus annuus HOM05D004055 ORTHO05D004795 6.7e-45 185.3 322 43.2
Lsat_1_v5_gn_5_40301 Lactuca sativa HOM05D004055 ORTHO05D004795 6.7e-45 185.3 323 43.0
Sp6g33560 Schrenkiella parvula HOM05D004055 ORTHO05D004795 1.5e-44 184.1 320 50.6
MSTRG.23289 Avicennia marina HOM05D004055 ORTHO05D004795 9.7e-44 181.4 365 40.5
Nitab4.5_0004021g0040 Nicotiana tabacum HOM05D004055 ORTHO05D004795 9.7e-44 181.4 332 47.9
DCAR_001415 Daucus carota HOM05D004055 ORTHO05D004795 2.2e-43 180.3 324 38.9
THA.LOC104799385 Tarenaya hassleriana HOM05D004055 ORTHO05D004795 2.2e-43 180.3 321 47.7
Oeu037779.1 Olea europaea HOM05D004055 ORTHO05D004795 6.3e-43 178.7 347 42.7
Hma1.2p1_0282F.1_g113380 Hydrangea macrophylla HOM05D004055 ORTHO05D004795 1.4e-42 177.6 341 41.9
MBI17_g17030_MAGBIO Magnolia biondii HOM05D004055 ORTHO05D004795 1.8e-42 177.2 325 39.7
Nitab4.5_0001582g0050 Nicotiana tabacum HOM05D004055 ORTHO05D004795 1.8e-42 177.2 346 42.5
CAN.G516.3 Capsicum annuum HOM05D004055 ORTHO05D004795 4.1e-42 176.0 327 44.0
Duzib114G0672 Durio zibethinus HOM05D004055 ORTHO05D004795 4.1e-42 176.0 225 52.0
EL10Ac6g15243 Beta vulgaris HOM05D004055 ORTHO05D004795 5.3e-42 175.6 338 43.8
AUR62017941 Chenopodium quinoa HOM05D004055 ORTHO05D004795 6.9e-42 175.3 307 42.0
Lsat_1_v5_gn_4_139020 Lactuca sativa HOM05D004055 ORTHO05D004795 1.2e-41 174.5 322 42.9
Aqoxy6G00380 Aquilegia oxysepala HOM05D004055 ORTHO05D004795 2.0e-41 173.7 335 43.3
Nn5g27192 Nelumbo nucifera HOM05D004055 ORTHO05D004795 2.6e-41 173.3 297 41.8
Duzib114G0632 Durio zibethinus HOM05D004055 ORTHO05D004795 3.4e-41 172.9 225 51.6
PGSC0003DMG400003992 Solanum tuberosum HOM05D004055 ORTHO05D004795 4.5e-41 172.6 331 44.1
Sopen11g001460 Solanum pennellii HOM05D004055 ORTHO05D004795 5.9e-41 172.2 332 45.8
Cc07_g17540 Coffea canephora HOM05D004055 ORTHO05D004795 1.0e-40 171.4 336 42.9
Gohir.A05G280900 Gossypium hirsutum HOM05D004055 ORTHO05D004795 1.0e-40 171.4 245 44.9
Solyc11g005450.3 Solanum lycopersicum HOM05D004055 ORTHO05D004795 1.3e-40 171.0 332 45.5
Migut.H02472 Erythranthe guttata HOM05D004055 ORTHO05D004795 1.7e-40 170.6 353 36.8
BcaB08g37176 Brassica carinata HOM05D004055 ORTHO05D004795 2.2e-40 170.2 326 48.2
Hund03496 Selenicereus undatus HOM05D004055 ORTHO05D004795 2.9e-40 169.9 336 41.4
THA.LOC104818468 Tarenaya hassleriana HOM05D004055 ORTHO05D004795 2.9e-40 169.9 321 39.9
C09p67670 Brassica napus HOM05D004055 ORTHO05D004795 8.5e-40 168.3 320 48.4
Migut.L00046 Erythranthe guttata HOM05D004055 ORTHO05D004795 8.5e-40 168.3 360 36.1
Cpa.g.sc72.32 Carica papaya HOM05D004055 ORTHO05D004795 1.4e-39 167.5 263 43.7
A10p27610 Brassica napus HOM05D004055 ORTHO05D004795 9.4e-39 164.9 320 47.2
BolC9t59529H Brassica oleracea HOM05D004055 ORTHO05D004795 9.4e-39 164.9 322 50.0
BraA10t44812Z Brassica rapa HOM05D004055 ORTHO05D004795 9.4e-39 164.9 320 46.9
Oeu047640.3 Olea europaea HOM05D004055 ORTHO05D004795 1.6e-38 164.1 259 41.3
Ah.02g122270 Amaranthus hybridus HOM05D004055 ORTHO05D004795 7.9e-38 161.8 251 44.2
CARHR203540 Cardamine hirsuta HOM05D004055 ORTHO05D004795 1.0e-37 161.4 235 48.1
SGA_v2.0_scaffold47G17681 Striga asiatica HOM05D004055 ORTHO05D004795 1.8e-37 160.6 381 36.5
unitig_736.g22361 Utricularia gibba HOM05D004055 ORTHO05D004795 1.8e-37 160.6 346 35.0
Lj4A857G22 Lonicera japonica HOM05D004055 ORTHO05D004795 2.0e-36 157.1 325 39.7
AUR62003632 Chenopodium quinoa HOM05D004055 ORTHO05D004795 5.7e-36 155.6 270 40.0
CDE08G1219 Ceratophyllum demersum HOM05D004055 ORTHO05D004795 1.7e-35 154.1 321 36.4
Dinv15094 Davidia involucrata HOM05D004055 ORTHO05D004795 2.2e-35 153.7 231 44.2
Sc16g0004020 Simmondsia chinensis HOM05D004055 ORTHO05D004795 2.2e-35 153.7 250 39.6
HPP92_004417 Vanilla planifolia HOM05D004055 ORTHO05D004795 6.3e-35 152.1 330 40.6
Sabra19G0021600 Salix brachista HOM05D004055 ORTHO05D004795 2.4e-34 150.2 208 44.7
CDE02G4766 Ceratophyllum demersum HOM05D004055 ORTHO05D004795 9.1e-34 148.3 327 35.8
SalBow8G2113 Salvia bowleyana HOM05D004055 ORTHO05D004795 9.1e-34 148.3 274 39.1
Peaxi162Scf00025g02619 Petunia axillaris HOM05D004055 ORTHO05D004795 1.7e-32 144.1 291 44.0
SalBow5G2387 Salvia bowleyana HOM05D004055 ORTHO05D004795 1.1e-31 141.4 377 40.6
ATR0820G131 Amborella trichopoda HOM05D004055 ORTHO05D004795 7.2e-31 138.7 338 35.5
Os12g0165700 Oryza sativa ssp. japonica HOM05D004055 ORTHO05D004795 7.2e-31 138.7 319 37.6
Gohir.D05G282900 Gossypium hirsutum HOM05D004055 ORTHO05D004795 2.7e-30 136.7 265 38.1
GSVIVG01026619001 Vitis vinifera HOM05D004055 ORTHO05D004795 2.7e-30 136.7 318 46.2
SGA_v2.0_scaffold2G01257 Striga asiatica HOM05D004055 ORTHO05D004795 6.7e-29 132.1 353 31.7
ECA246G2063 Erigeron canadensis HOM05D004055 ORTHO05D004795 8.8e-29 131.7 328 42.1
Dinv41077 Davidia involucrata HOM05D004055 ORTHO05D004795 1.5e-28 131.0 322 34.2
Zm00001eb407610 Zea mays HOM05D004055 ORTHO05D004795 3.7e-27 126.3 306 39.2
Haze_25105 Corylus avellana HOM05D004055 ORTHO05D004795 8.2e-27 125.2 203 43.3
Zm00001eb202520 Zea mays HOM05D004055 ORTHO05D004795 5.0e-24 115.9 330 33.3
unitig_899.g14991 Utricularia gibba HOM05D004055 ORTHO05D004795 7.2e-23 112.1 347 31.1
Nitab4.5_0023764g0010 Nicotiana tabacum HOM05D004055 ORTHO05D004795 1.2e-22 111.3 175 42.3
Oeu011950.2 Olea europaea HOM05D004055 ORTHO05D004795 1.2e-22 111.3 240 36.2
Peaxi162Scf00599g00035 Petunia axillaris HOM05D004055 ORTHO05D004795 1.0e-21 108.2 203 36.9
Lalb_Chr13g0296401 Lupinus albus HOM05D004055 ORTHO05D004795 3.0e-21 106.7 195 39.5
Solyc04g071520.3 Solanum lycopersicum HOM05D004055 ORTHO05D004795 2.6e-20 103.6 186 40.3
PGSC0003DMG400024089 Solanum tuberosum HOM05D004055 ORTHO05D004795 2.6e-20 103.6 177 39.0
CAN.G869.1 Capsicum annuum HOM05D004055 ORTHO05D004795 5.7e-20 102.4 200 38.5
SGA_v2.0_scaffold48G18001 Striga asiatica HOM05D004055 ORTHO05D004795 1.7e-19 100.9 187 43.3
Os11g0166800 Oryza sativa ssp. japonica HOM05D004055 ORTHO05D004795 2.4e-18 97.1 167 38.3
Cfa009957 Carpinus fangiana HOM05D000362 ORTHO05D000325 3.1e-18 96.7 153 42.5
Sopen04g027490 Solanum pennellii HOM05D004055 ORTHO05D004795 5.3e-18 95.9 187 38.0
MSTRG.1089 Avicennia marina HOM05D004055 ORTHO05D004795 9.1e-18 95.1 235 34.5
SabraUnG0003900 Salix brachista HOM05D004055 ORTHO05D004795 3.5e-17 93.2 121 51.2
arahy.Tifrunner.gnm1.ann1.48VWLX Arachis hypogaea HOM05D004055 ORTHO05D004795 5.9e-17 92.4 57 78.9
arahy.Tifrunner.gnm1.ann1.AC78YF Arachis hypogaea HOM05D004055 ORTHO05D004795 5.9e-17 92.4 69 66.7
Lj2A578T13 Lonicera japonica HOM05D004055 ORTHO05D004795 1.3e-16 91.3 174 46.6
Lj2A588T35 Lonicera japonica HOM05D004055 ORTHO05D004795 1.3e-16 91.3 174 46.6
arahy.Tifrunner.gnm1.ann1.PLK8LK Arachis hypogaea HOM05D003363 ORTHO05D003952 1.9e-15 87.4 65 69.2
arahy.Tifrunner.gnm1.ann1.7XUF8M Arachis hypogaea HOM05D004055 ORTHO05D004795 2.8e-11 73.6 86 51.2
Nitab4.5_0001224g0010 Nicotiana tabacum HOM05D004055 ORTHO05D004795 1.2e-09 68.2 69 52.2
ATR0307G132 Amborella trichopoda HOM05D002493 ORTHO05D003175 5.9e-09 65.9 196 26.0
CANSAT35G0805 Cannabis sativa HOM05D004055 ORTHO05D004795 3.8e-08 63.2 44 63.6
Oeu037459.1 Olea europaea HOM05D017117 ORTHO05D025954 8.5e-08 62.0 90 42.2
Pp3c6_10210 Physcomitrium patens HOM05D002493 ORTHO05D003175 1.1e-07 61.6 204 26.0
arahy.Tifrunner.gnm1.ann1.IW1VVW Arachis hypogaea HOM05D003363 ORTHO05D031544 5.5e-07 59.3 41 68.3
C02p02180 Brassica napus HOM05D002493 ORTHO05D003175 9.4e-07 58.5 223 23.3
BcaC03g13147 Brassica carinata HOM05D002493 ORTHO05D003175 1.2e-06 58.2 222 23.4
Lalb_Chr14g0365651 Lupinus albus HOM05D002493 ORTHO05D003175 1.6e-06 57.8 214 27.1
Psat3g080480 Pisum sativum HOM05D002493 ORTHO05D003175 3.6e-06 56.6 206 24.8
SMO203G0158 Selaginella moellendorffii HOM05D002493 ORTHO05D004795 6.1e-06 55.8 187 28.3


User provided reference genes

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