Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16867_v3 Cicer arietinum L. HOM05D006808 ORTHO05D008610 2.7e-80 302.0 159 100.0
Ca_29954_v3 Cicer arietinum L. HOM05D006808 ORTHO05D008610 8.2e-77 290.4 178 89.3
Medtr3g093980 Medicago truncatula HOM05D006808 ORTHO05D008610 3.4e-70 268.5 178 81.5
Psat5g069280 Pisum sativum HOM05D006808 ORTHO05D008610 3.1e-68 261.9 178 79.8
TPR.G16134 Trifolium pratense HOM05D006808 ORTHO05D008610 2.7e-67 258.8 176 79.0
arahy.Tifrunner.gnm1.ann1.SNS0I7 Arachis hypogaea HOM05D006808 ORTHO05D008610 1.7e-66 256.1 178 77.0
arahy.Tifrunner.gnm1.ann1.WYW97W Arachis hypogaea HOM05D006808 ORTHO05D008610 1.7e-66 256.1 178 77.0
Lj1g0023491 Lotus japonicus HOM05D006808 ORTHO05D008610 1.9e-65 252.7 178 77.0
Glyma.04G222400 Glycine max HOM05D006808 ORTHO05D008610 1.4e-63 246.5 178 74.7
Lalb_Chr23g0272211 Lupinus albus HOM05D006808 ORTHO05D008610 3.0e-63 245.4 190 72.1
Glyma.06G143000 Glycine max HOM05D006808 ORTHO05D008610 8.8e-63 243.8 178 75.8
Phvul.009G143100 Phaseolus vulgaris HOM05D006808 ORTHO05D008610 1.7e-61 239.6 178 73.0
VMungo1309G1960 Vigna mungo HOM05D006808 ORTHO05D008610 8.3e-61 237.3 178 71.9
FAN10G3082 Fragaria x ananassa HOM05D006808 ORTHO05D008610 9.1e-60 233.8 178 69.1
FvH4_7g25890 Fragaria vesca HOM05D006808 ORTHO05D008610 2.0e-59 232.6 178 68.5
FAN06G1576 Fragaria x ananassa HOM05D006808 ORTHO05D008610 2.0e-59 232.6 178 68.5
FAN03G2408 Fragaria x ananassa HOM05D006808 ORTHO05D008610 3.5e-59 231.9 178 68.5
FAN01G2160 Fragaria x ananassa HOM05D006808 ORTHO05D008610 1.0e-58 230.3 178 68.5
QL08p064804 Quercus lobata HOM05D006808 ORTHO05D008610 1.0e-58 230.3 177 70.1
Prupe.2G263900 Prunus persica HOM05D006808 ORTHO05D008610 3.8e-58 228.4 178 69.7
Gohir.A05G403200 Gossypium hirsutum HOM05D006808 ORTHO05D008610 8.6e-58 227.3 178 69.1
Gohir.D04G012300 Gossypium hirsutum HOM05D006808 ORTHO05D008610 8.6e-58 227.3 178 69.1
Duzib114G0525 Durio zibethinus HOM05D006808 ORTHO05D008610 1.1e-57 226.9 178 69.1
COL.COLO4_08324 Corchorus olitorius HOM05D006808 ORTHO05D008610 1.5e-57 226.5 178 68.5
Atru.chr12.177 Acer truncatum HOM05D006808 ORTHO05D008610 1.9e-57 226.1 178 68.0
GSVIVG01032685001 Vitis vinifera HOM05D006808 ORTHO05D008610 1.9e-57 226.1 178 68.0
Actinidia13650 Actinidia chinensis HOM05D006808 ORTHO05D008610 5.5e-57 224.6 178 69.7
PGR142G2065 Punica granatum HOM05D006808 ORTHO05D008610 7.2e-57 224.2 178 68.0
CANSAT56G2327 Cannabis sativa HOM05D006808 ORTHO05D008610 1.6e-56 223.0 178 67.4
Duzib128G2014 Durio zibethinus HOM05D006808 ORTHO05D008610 1.6e-56 223.0 178 67.4
Thecc.10G181400 Theobroma cacao HOM05D006808 ORTHO05D008610 1.6e-56 223.0 178 67.4
vmacro06890 Vaccinium macrocarpon HOM05D006808 ORTHO05D008610 2.1e-56 222.6 178 68.5
Dinv34481 Davidia involucrata HOM05D006808 ORTHO05D008610 3.0e-55 218.8 178 66.9
Rhsim03G0152000 Rhododendron simsii HOM05D006808 ORTHO05D008610 3.0e-55 218.8 178 66.3
Oeu044164.1 Olea europaea HOM05D006808 ORTHO05D008610 6.8e-55 217.6 178 65.7
TAR623G0123 Trochodendron aralioides HOM05D006808 ORTHO05D008610 6.8e-55 217.6 178 67.4
Sabra19G0073500 Salix brachista HOM05D006808 ORTHO05D008610 2.0e-54 216.1 178 64.0
Potri.019G057800 Populus trichocarpa HOM05D006808 ORTHO05D008610 5.7e-54 214.5 178 64.0
CiPaw.02G198800 Carya illinoinensis HOM05D006808 ORTHO05D008610 1.7e-53 213.0 176 64.8
Nn2g10310 Nelumbo nucifera HOM05D006808 ORTHO05D008610 1.7e-53 213.0 181 65.2
CAN.G203.51 Capsicum annuum HOM05D006808 ORTHO05D008610 2.2e-53 212.6 178 64.0
TWI73G0462 Tripterygium wilfordii HOM05D006808 ORTHO05D008610 3.7e-53 211.8 178 65.2
MSTRG.172 Avicennia marina HOM05D006808 ORTHO05D008610 4.9e-53 211.5 178 64.6
Manes.07G140900 Manihot esculenta HOM05D006808 ORTHO05D008610 4.9e-53 211.5 178 65.2
Lj8A55T83 Lonicera japonica HOM05D006808 ORTHO05D008610 6.3e-53 211.1 178 65.2
TWI53G1993 Tripterygium wilfordii HOM05D006808 ORTHO05D008610 1.1e-52 210.3 178 64.6
Sopen05g030780 Solanum pennellii HOM05D006808 ORTHO05D008610 5.4e-52 208.0 178 62.9
Aqoxy4G02407 Aquilegia oxysepala HOM05D006808 ORTHO05D008610 1.2e-51 206.8 176 63.6
Nn5g26853 Nelumbo nucifera HOM05D006808 ORTHO05D008610 1.2e-51 206.8 178 62.9
Solyc05g052240.3 Solanum lycopersicum HOM05D006808 ORTHO05D008610 1.2e-51 206.8 178 62.4
ClCG07G005100 Citrullus lanatus HOM05D006808 ORTHO05D008610 2.7e-51 205.7 178 63.5
Lalb_Chr08g0239161 Lupinus albus HOM05D006808 ORTHO05D008610 2.7e-51 205.7 129 83.7
ECA233G3418 Erigeron canadensis HOM05D006808 ORTHO05D008610 4.6e-51 204.9 179 63.7
SalBow3G3573 Salvia bowleyana HOM05D006808 ORTHO05D008610 5.9e-51 204.5 179 62.6
Lsat_1_v5_gn_8_11480 Lactuca sativa HOM05D006808 ORTHO05D008610 7.8e-51 204.1 179 63.7
Cpa.g.sc19.60 Carica papaya HOM05D006808 ORTHO05D008610 1.7e-50 203.0 180 63.3
CsaV3_5G010920 Cucumis sativus L. HOM05D006808 ORTHO05D008610 3.9e-50 201.8 178 62.9
MD01G1167300 Malus domestica HOM05D006808 ORTHO05D008610 3.9e-50 201.8 159 69.8
Cc02_g05390 Coffea canephora HOM05D006808 ORTHO05D008610 6.6e-50 201.1 178 60.1
MELO3C020146.2 Cucumis melo HOM05D006808 ORTHO05D008610 6.6e-50 201.1 178 62.9
HanXRQChr08g0221541 Helianthus annuus HOM05D006808 ORTHO05D008610 1.5e-49 199.9 179 62.6
SGA_v2.0_scaffold384G50428 Striga asiatica HOM05D006808 ORTHO05D008610 1.5e-49 199.9 179 61.5
ATR1127G203 Amborella trichopoda HOM05D006808 ORTHO05D008610 3.3e-49 198.7 178 59.6
MBI03_g08370_MAGBIO Magnolia biondii HOM05D006808 ORTHO05D008610 5.6e-49 198.0 178 62.4
CDE07G0319 Ceratophyllum demersum HOM05D006808 ORTHO05D008610 6.2e-48 194.5 176 59.1
PSO017G4017 Papaver somniferum HOM05D006808 ORTHO05D008610 1.4e-47 193.4 176 59.1
PSO017G4891 Papaver somniferum HOM05D006808 ORTHO05D008610 1.4e-47 193.4 176 59.1
PSO017G6829 Papaver somniferum HOM05D006808 ORTHO05D008610 1.4e-47 193.4 176 59.1
PSO170G3172 Papaver somniferum HOM05D006808 ORTHO05D008610 4.0e-47 191.8 176 59.1
Hund15819 Selenicereus undatus HOM05D006808 ORTHO05D008610 1.2e-46 190.3 178 62.9
CDE06G0937 Ceratophyllum demersum HOM05D006808 ORTHO05D008610 2.6e-46 189.1 176 56.8
MD07G1233400 Malus domestica HOM05D006808 ORTHO05D008610 3.7e-45 185.3 178 60.7
Sp6g37560 Schrenkiella parvula HOM05D006808 ORTHO05D008610 3.7e-45 185.3 177 59.9
C09p71430 Brassica napus HOM05D006808 ORTHO05D008610 4.9e-45 184.9 177 58.8
BolC9t59906H Brassica oleracea HOM05D006808 ORTHO05D008610 4.9e-45 184.9 177 58.8
A10p30920 Brassica napus HOM05D006808 ORTHO05D008610 6.4e-45 184.5 177 58.8
BraA10t45137Z Brassica rapa HOM05D006808 ORTHO05D008610 6.4e-45 184.5 177 58.8
Thhalv10014675m.g Eutrema salsugineum HOM05D006808 ORTHO05D008610 6.4e-45 184.5 177 59.9
Sc11g0005840 Simmondsia chinensis HOM05D006808 ORTHO05D008610 6.4e-45 184.5 178 57.9
EL10Ac2g02642 Beta vulgaris HOM05D006808 ORTHO05D008610 1.9e-44 183.0 178 58.4
AL6G15110 Arabidopsis lyrata HOM05D006808 ORTHO05D008610 4.1e-44 181.8 177 57.6
CARHR207960 Cardamine hirsuta HOM05D006808 ORTHO05D008610 5.4e-44 181.4 177 58.2
AT5G05270 Arabidopsis thaliana HOM05D006808 ORTHO05D008610 9.2e-44 180.6 177 57.6
Carub.0006s0420 Capsella rubella HOM05D006808 ORTHO05D008610 1.6e-43 179.9 177 57.6
Os11g0116300 Oryza sativa ssp. japonica HOM05D006808 ORTHO05D008610 7.8e-43 177.6 177 55.4
Os12g0115700 Oryza sativa ssp. japonica HOM05D006808 ORTHO05D008610 1.7e-42 176.4 177 54.8
SHI28909 Sapria himalayana HOM05D006808 ORTHO05D008610 1.7e-42 176.4 178 53.4
Aa31LG11G6120 Aethionema arabicum HOM05D006808 ORTHO05D008610 2.3e-42 176.0 177 58.2
HPP92_015591 Vanilla planifolia HOM05D006808 ORTHO05D008610 3.0e-42 175.6 168 54.2
DCAR_019805 Daucus carota HOM05D006808 ORTHO05D008610 5.0e-42 174.9 178 55.1
Zm00001eb163860 Zea mays HOM05D006808 ORTHO05D008610 8.1e-40 167.5 182 52.7
Haze_17355 Corylus avellana HOM05D006808 ORTHO05D008610 1.4e-36 156.8 165 55.8
Sed0020146 Sechium edule HOM05D006808 ORTHO05D008610 3.5e-35 152.1 109 74.3
Nitab4.5_0002279g0030 Nicotiana tabacum HOM05D006808 ORTHO05D008610 7.8e-35 151.0 163 56.4
Lsat_1_v5_gn_6_40701 Lactuca sativa HOM05D006808 ORTHO05D008610 4.3e-33 145.2 180 45.6
Nitab4.5_0000375g0270 Nicotiana tabacum HOM05D006808 ORTHO05D008610 1.2e-32 143.7 159 54.7
Ah.12g064370 Amaranthus hybridus HOM05D006808 ORTHO05D008610 3.6e-32 142.1 130 62.3
unitig_736.g22963 Utricularia gibba HOM05D001179 ORTHO05D003685 8.1e-32 141.0 154 51.9
Pp3c4_25770 Physcomitrium patens HOM05D006808 ORTHO05D008610 1.9e-25 119.8 179 39.7
Pp3c26_4040 Physcomitrium patens HOM05D006808 ORTHO05D008610 1.4e-23 113.6 175 39.4
SMO358G0139 Selaginella moellendorffii HOM05D006808 ORTHO05D008610 4.0e-23 112.1 176 40.3
Mapoly0175s0004 Marchantia polymorpha HOM05D006808 ORTHO05D008610 8.7e-18 94.4 171 36.3
CSS0015529 Camellia sinensis var. sinensis HOM05D006808 ORTHO05D008610 5.6e-17 91.7 79 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3318 Anthoceros agrestis HOM05D006808 ORTHO05D008610 1.2e-14 84.0 173 34.1
PSO017G1798 Papaver somniferum HOM05D006808 ORTHO05D008610 4.3e-09 65.5 61 57.4
AagrBONN_evm.TU.Sc2ySwM_369.402 Anthoceros agrestis HOM05D006808 ORTHO05D008610 5.6e-09 65.1 161 29.8
MD00G1021400 Malus domestica HOM05D006808 ORTHO05D008610 5.6e-09 65.1 40 90.0
AagrBONN_evm.TU.Sc2ySwM_369.397 Anthoceros agrestis HOM05D006808 ORTHO05D008769 1.6e-08 63.5 161 30.4
AagrBONN_evm.TU.Sc2ySwM_344.5062 Anthoceros agrestis HOM05D006808 ORTHO05D008610 2.1e-08 63.2 161 31.1
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.6e-08 62.4 161 28.6
AagrBONN_evm.TU.Sc2ySwM_228.5586 Anthoceros agrestis HOM05D006808 ORTHO05D008610 4.8e-08 62.0 161 30.4
AagrBONN_evm.TU.Sc2ySwM_117.3383 Anthoceros agrestis HOM05D006808 ORTHO05D008610 8.1e-08 61.2 98 36.7
MD08G1224200 Malus domestica HOM05D006808 ORTHO05D008610 5.3e-07 58.5 48 70.8
Mapoly0044s0117 Marchantia polymorpha HOM05D007153 ORTHO05D008769 9.0e-07 57.8 168 29.8
AagrBONN_evm.TU.Sc2ySwM_369.401 Anthoceros agrestis HOM05D006808 ORTHO05D008610 2.6e-06 56.2 97 32.0
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 3.4e-06 55.8 173 28.9


User provided reference genes

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