Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 9.6e-88 327.0 193 100.0
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.3e-73 279.3 193 90.7
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 4.8e-55 218.4 195 64.6
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 7.7e-53 211.1 193 62.2
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 2.3e-49 199.5 196 60.7
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 1.7e-47 193.4 184 63.6
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 7.0e-46 188.0 184 60.9
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.7e-44 183.3 185 57.8
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 2.2e-44 183.0 185 60.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 3.8e-44 182.2 185 57.8
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.5e-43 179.5 235 57.0
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 9.4e-43 177.6 188 56.9
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 1.5e-40 170.2 186 71.0
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 4.4e-40 168.7 186 65.1
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 2.2e-39 166.4 195 65.1
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 4.9e-39 165.2 190 53.2
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 4.9e-39 165.2 188 61.2
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 1.1e-38 164.1 175 69.7
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 2.4e-38 162.9 193 57.5
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 3.1e-38 162.5 196 59.7
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 4.1e-38 162.2 190 48.4
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 5.4e-38 161.8 198 51.5
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 5.4e-38 161.8 188 53.2
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 5.4e-38 161.8 191 52.9
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 9.1e-38 161.0 183 54.1
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.0e-37 159.8 186 50.0
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.7e-37 159.5 196 61.7
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 2.7e-37 159.5 196 61.7
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 3.5e-37 159.1 187 62.6
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 3.5e-37 159.1 196 61.7
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 4.5e-37 158.7 197 64.0
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.5e-37 158.7 187 51.3
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 4.5e-37 158.7 186 52.7
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 4.5e-37 158.7 185 50.8
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 5.9e-37 158.3 190 51.6
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 7.7e-37 157.9 188 62.8
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.3e-36 157.1 186 52.2
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.3e-36 157.1 184 64.1
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.3e-36 157.1 182 63.7
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.7e-36 156.8 187 50.8
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 2.3e-36 156.4 187 61.5
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 3.8e-36 155.6 186 64.5
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 1.1e-35 154.1 174 64.4
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.5e-35 153.7 198 51.5
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.9e-35 153.3 187 55.6
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.9e-35 153.3 186 61.3
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.9e-35 153.3 178 62.4
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 3.3e-35 152.5 186 51.6
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 3.3e-35 152.5 180 65.6
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 4.2e-35 152.1 180 60.6
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 7.2e-35 151.4 183 50.8
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 9.5e-35 151.0 186 60.8
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 1.2e-34 150.6 180 55.0
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.2e-34 150.6 185 48.1
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 1.6e-34 150.2 187 62.0
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.6e-34 150.2 190 49.5
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 1.6e-34 150.2 186 51.1
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 2.1e-34 149.8 190 52.1
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.8e-34 149.4 187 49.2
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.8e-34 149.4 187 49.2
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 3.6e-34 149.1 195 59.0
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 3.6e-34 149.1 191 50.8
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.4e-33 147.1 176 61.4
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.4e-33 147.1 191 50.8
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.8e-33 146.7 186 49.5
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 5.2e-33 145.2 196 54.6
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 6.8e-33 144.8 186 60.2
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 8.9e-33 144.4 185 49.2
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.2e-32 144.1 187 46.5
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 2.6e-32 142.9 187 46.5
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 3.4e-32 142.5 187 46.0
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 7.5e-32 141.4 187 46.0
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 7.5e-32 141.4 187 46.0
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 7.5e-32 141.4 192 47.4
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 9.8e-32 141.0 184 46.2
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.3e-31 140.6 185 48.6
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.3e-31 140.6 192 47.4
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.7e-31 140.2 188 45.7
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 1.7e-31 140.2 186 58.6
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.7e-31 140.2 187 45.5
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.7e-31 140.2 196 58.2
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 2.8e-31 139.4 190 45.3
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 2.8e-31 139.4 184 57.1
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 2.8e-31 139.4 189 46.0
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.9e-31 138.7 195 49.2
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 4.9e-31 138.7 189 48.7
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.1e-30 137.5 190 45.3
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 2.4e-30 136.3 184 47.3
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 2.4e-30 136.3 167 61.1
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 3.2e-30 136.0 177 49.2
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.2e-29 134.0 187 55.6
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.3e-28 130.6 183 54.1
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 5.0e-28 128.6 132 59.1
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 6.6e-28 128.3 132 54.5
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 8.6e-28 127.9 193 42.5
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.5e-27 127.1 186 44.1
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 2.5e-27 126.3 184 59.2
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 4.3e-27 125.6 190 53.2
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 4.3e-27 125.6 131 69.5
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 9.5e-27 124.4 187 44.9
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.2e-26 124.0 178 43.3
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.4e-25 120.6 183 44.8
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.8e-25 120.2 186 43.5
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.8e-25 120.2 179 58.7
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.3e-25 119.8 183 42.1
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 2.3e-25 119.8 180 42.2
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.0e-25 119.0 184 42.9
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 5.2e-25 118.6 120 54.2
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.2e-24 117.5 128 53.1
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.0e-24 116.7 184 41.3
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.0e-24 116.7 258 36.8
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 2.6e-24 116.3 123 68.3
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 1.7e-23 113.6 194 47.9
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.9e-23 112.8 130 50.0
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 1.2e-21 107.5 129 47.3
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.6e-21 107.1 129 51.2
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.8e-21 104.8 120 53.3
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.3e-20 103.2 190 36.3
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.0e-20 102.8 104 59.6
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 8.6e-20 101.3 123 65.0
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.5e-19 99.8 123 65.0
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 3.3e-19 99.4 182 39.0
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.3e-17 93.2 148 43.9
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 6.8e-17 91.7 149 40.9
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 6.8e-17 91.7 123 43.9
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 5.8e-16 88.6 112 51.8
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 6.4e-15 85.1 103 48.5
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 6.4e-15 85.1 103 48.5
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 2.4e-14 83.2 97 51.5
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 3.5e-13 79.3 195 33.3
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 6.6e-12 75.1 202 31.7
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 9.5e-11 71.2 97 46.4
TPR.G24777 Trifolium pratense HOM05D000029 ORTHO05D008675 4.0e-09 65.9 68 58.8
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 4.0e-09 65.9 88 48.9
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 2.9e-07 59.7 188 30.3


User provided reference genes

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