Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 7.6e-85 317.0 147 100.0
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.1e-70 270.0 143 87.4
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 6.9e-70 267.3 145 84.1
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.6e-69 265.4 144 83.3
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 2.6e-69 265.4 145 82.8
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 2.6e-69 265.4 144 84.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 4.5e-69 264.6 144 81.2
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 5.8e-69 264.2 145 82.8
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 7.6e-69 263.8 146 83.6
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.0e-68 263.5 144 81.9
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 1.3e-68 263.1 145 83.4
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.7e-68 262.7 144 83.3
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.7e-68 262.7 144 81.9
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.9e-68 261.9 145 80.7
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 2.9e-68 261.9 144 80.6
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 8.4e-68 260.4 146 84.2
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.4e-67 259.6 144 82.6
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 9.3e-67 256.9 144 81.2
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 9.3e-67 256.9 144 81.2
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 82.2
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.3e-65 252.3 145 79.3
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.3e-65 252.3 145 79.3
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.0e-65 251.9 146 79.5
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.0e-65 251.9 145 80.0
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.0e-65 251.9 144 78.5
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 3.0e-65 251.9 144 79.9
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 6.7e-65 250.8 145 77.2
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 8.7e-65 250.4 139 81.3
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.1e-64 250.0 144 79.2
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-64 249.2 145 78.6
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 2.5e-64 248.8 145 80.7
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 4.3e-64 248.1 144 78.5
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 5.7e-64 247.7 144 77.1
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 7.4e-64 247.3 145 80.0
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.3e-63 246.5 144 78.5
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 78.8
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.3e-63 246.5 145 75.9
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.2e-63 245.7 144 77.1
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.8e-63 245.4 144 77.8
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.2e-63 243.8 144 77.1
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.1e-62 243.4 144 77.1
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.8e-62 242.7 144 75.7
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.8e-62 242.7 144 75.7
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.4e-62 242.3 143 79.0
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.1e-62 241.9 144 73.6
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 3.1e-62 241.9 144 76.4
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 4.1e-62 241.5 148 79.1
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 4.1e-62 241.5 144 79.2
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 4.1e-62 241.5 144 79.2
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 4.1e-62 241.5 144 76.4
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.3e-62 241.1 144 75.0
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 5.3e-62 241.1 144 76.4
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 6.9e-62 240.7 144 75.0
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 6.9e-62 240.7 145 72.4
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 74.7
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 9.0e-62 240.4 145 71.7
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 9.0e-62 240.4 145 73.8
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 9.0e-62 240.4 145 73.8
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 9.0e-62 240.4 145 73.8
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.5e-61 239.6 145 71.0
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.5e-61 239.6 144 76.4
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 2.0e-61 239.2 145 71.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.0e-61 239.2 144 74.3
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 75.3
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.0e-61 239.2 144 75.0
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 145 75.2
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 73.3
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 144 74.3
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 3.4e-61 238.4 145 79.3
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 4.5e-61 238.0 144 75.0
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 5.9e-61 237.7 145 74.5
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 5.9e-61 237.7 144 75.0
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 7.6e-61 237.3 144 74.3
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.0e-60 236.9 132 81.8
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.0e-60 236.9 132 81.8
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.3e-60 236.5 145 71.7
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.3e-60 236.5 144 72.2
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.7e-60 236.1 145 74.5
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 2.9e-60 235.3 145 71.0
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 2.9e-60 235.3 148 74.3
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.9e-60 235.3 144 74.3
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 8.5e-60 233.8 132 81.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 8.5e-60 233.8 145 70.3
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.9e-59 232.6 145 70.3
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.9e-59 232.6 145 70.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 2.5e-59 232.3 145 77.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.2e-59 231.9 146 73.3
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.5e-59 231.1 144 72.2
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 5.5e-59 231.1 144 72.2
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 7.2e-59 230.7 147 72.1
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.2e-59 230.7 143 72.7
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.2e-58 229.9 145 71.7
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-58 229.9 140 75.0
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-58 229.6 145 70.3
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.7e-58 228.8 146 70.5
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.7e-58 228.8 147 72.8
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 2.7e-58 228.8 144 72.2
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 3.6e-58 228.4 144 72.2
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 7.9e-58 227.3 145 69.0
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 7.9e-58 227.3 137 75.2
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.8e-57 226.1 143 70.6
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 2.3e-57 225.7 143 72.0
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.3e-57 225.7 147 70.7
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 3.9e-57 224.9 130 79.2
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 8.8e-57 223.8 148 71.6
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 8.8e-57 223.8 148 70.9
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.8e-57 223.8 146 71.9
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.5e-56 223.0 147 72.1
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 1.5e-56 223.0 144 68.8
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.5e-56 222.2 125 80.8
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 3.3e-56 221.9 150 71.3
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 9.7e-56 220.3 146 69.2
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 9.7e-56 220.3 146 69.2
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.3e-55 219.9 146 69.9
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.3e-55 219.9 146 69.9
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 2.8e-55 218.8 148 70.9
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 2.8e-55 218.8 148 70.9
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 2.8e-55 218.8 148 70.9
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.8e-55 218.8 145 68.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 4.8e-55 218.0 148 69.6
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 6.3e-55 217.6 130 70.8
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.1e-54 216.9 149 69.1
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-54 216.9 148 70.9
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.1e-54 215.3 148 68.2
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.1e-54 215.3 148 68.2
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 9.1e-54 213.8 148 69.6
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.6e-53 212.2 132 77.3
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 5.9e-53 211.1 136 69.9
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-52 210.3 146 69.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.0e-52 210.3 146 69.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.0e-52 210.3 146 69.2
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.3e-52 209.9 148 67.6
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.4e-51 206.5 144 66.7
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.5e-51 205.7 115 77.4
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 9.4e-51 203.8 150 64.0
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.0e-49 200.3 153 66.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 1.4e-49 199.9 134 70.1
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 3.0e-49 198.7 144 58.3
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.5e-48 196.4 144 65.3
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.5e-48 196.4 123 74.0
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.3e-47 193.4 144 57.6
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.7e-47 193.0 144 63.2
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.9e-43 179.5 144 67.4
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 2.2e-39 166.0 100 71.0
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 6.3e-39 164.5 99 74.7
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.6e-37 159.1 143 57.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.0e-36 157.1 146 54.8
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.3e-36 156.8 144 55.6
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 3.2e-35 152.1 95 74.7
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 9.7e-32 140.6 122 55.7
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 7.2e-27 124.4 141 46.8
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 8.3e-23 110.9 67 74.6
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.2e-21 107.1 126 47.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 7.7e-21 104.4 73 65.8
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 1.1e-19 100.5 90 53.3
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.6e-10 70.1 92 37.0
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 7.5e-08 61.2 37 73.0
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 4.1e-06 55.5 84 35.7


User provided reference genes

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