Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 3.1e-265 917.9 462 100.0
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 5.6e-235 817.4 463 88.6
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 7.3e-235 817.0 464 88.1
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.4e-230 802.0 445 88.8
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.3e-228 795.4 444 87.8
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 2.9e-223 778.5 445 85.4
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 6.5e-223 777.3 444 85.8
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.2e-222 775.0 444 84.9
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.2e-221 773.1 433 88.2
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.9e-219 765.8 444 84.9
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 6.9e-217 757.3 448 82.8
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.2e-216 756.5 441 84.1
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.0e-215 753.4 444 83.8
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 5.0e-215 751.1 444 82.7
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 2.2e-202 709.1 444 79.5
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.7e-202 708.4 459 77.6
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.1e-201 704.9 460 76.7
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.3e-196 689.1 429 77.9
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.5e-195 686.4 446 75.1
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 7.4e-195 684.1 440 75.5
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.4e-195 684.1 458 73.4
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 7.4e-195 684.1 462 72.7
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 9.7e-195 683.7 456 75.4
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.3e-194 683.3 444 76.4
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 2.8e-194 682.2 459 73.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 6.3e-194 681.0 446 75.1
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 8.2e-194 680.6 429 76.9
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-193 680.2 452 75.2
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-193 680.2 452 75.2
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 4.1e-193 678.3 443 74.7
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.1e-193 678.3 440 74.8
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 5.3e-193 677.9 449 75.1
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 5.3e-193 677.9 452 74.8
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.3e-193 677.9 452 74.6
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.3e-193 677.9 452 74.6
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 5.3e-193 677.9 444 75.0
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 7.0e-193 677.6 449 73.9
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 9.1e-193 677.2 449 74.2
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 1.2e-192 676.8 450 75.1
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.0e-192 676.0 446 73.1
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 2.6e-192 675.6 461 73.1
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 3.5e-192 675.2 444 75.7
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 4.5e-192 674.9 444 74.5
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 5.9e-192 674.5 447 74.3
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 5.9e-192 674.5 446 74.7
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.7e-192 674.1 427 76.8
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 7.7e-192 674.1 446 74.4
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 1.3e-191 673.3 458 72.5
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.7e-191 672.9 431 77.0
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 3.8e-191 671.8 430 77.2
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 3.8e-191 671.8 447 75.2
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 5.0e-191 671.4 442 74.0
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.5e-190 669.8 446 73.5
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.9e-190 669.5 460 71.7
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.2e-190 668.7 457 72.9
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 3.2e-190 668.7 446 73.8
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.2e-190 668.7 452 74.3
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.2e-190 668.3 458 71.2
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 5.5e-190 667.9 446 73.1
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 7.2e-190 667.5 451 73.2
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 9.4e-190 667.2 463 72.1
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 9.4e-190 667.2 444 74.3
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 9.4e-190 667.2 444 74.3
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.6e-189 666.4 452 71.7
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.6e-189 666.4 440 73.2
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.7e-189 665.6 429 75.8
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.6e-189 665.2 446 73.8
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.6e-189 665.2 443 73.1
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 6.1e-189 664.5 430 75.6
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.0e-188 663.7 451 72.7
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 2.3e-188 662.5 453 72.6
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 3.0e-188 662.1 451 73.4
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.0e-188 661.8 446 72.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 4.0e-188 661.8 434 73.5
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 6.7e-188 661.0 427 74.9
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 8.8e-188 660.6 461 71.1
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.0e-187 659.4 444 73.6
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 2.6e-187 659.1 470 70.2
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 2.6e-187 659.1 464 70.9
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.3e-187 658.7 445 74.2
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 5.7e-187 657.9 456 71.3
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 5.7e-187 657.9 440 73.2
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 5.7e-187 657.9 447 72.5
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 9.7e-187 657.1 450 73.6
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.2e-186 656.0 454 70.7
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 4.8e-186 654.8 461 69.8
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.4e-185 653.3 447 70.2
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.4e-185 653.3 457 70.2
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.1e-185 652.1 457 70.9
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.1e-185 651.7 464 71.3
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 5.3e-185 651.4 426 75.1
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.2e-184 650.2 450 70.9
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.6e-184 649.8 428 73.8
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.6e-184 649.8 450 70.4
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 3.5e-184 648.7 453 70.0
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 4.5e-184 648.3 431 72.6
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 7.7e-184 647.5 465 68.8
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.3e-183 646.7 453 68.9
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.9e-183 645.6 453 69.5
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 8.5e-183 644.0 465 68.6
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.1e-182 643.7 457 69.1
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 8.0e-181 637.5 448 70.1
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.0e-181 637.5 459 67.5
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 1.4e-180 636.7 448 71.0
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 4.0e-180 635.2 446 70.2
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 2.6e-179 632.5 455 69.2
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 7.5e-179 630.9 451 68.7
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 8.3e-178 627.5 465 67.7
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 4.1e-177 625.2 444 69.1
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 7.0e-177 624.4 426 71.1
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.2e-176 623.6 437 69.1
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.7e-175 619.8 432 70.1
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 2.9e-175 619.0 434 69.8
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 3.8e-175 618.6 429 70.2
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 8.5e-175 617.5 437 69.3
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 8.5e-175 617.5 437 69.3
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.5e-174 616.7 454 67.8
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.9e-174 616.3 429 70.4
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.2e-174 615.5 426 69.7
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 4.2e-174 615.1 432 69.7
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 9.4e-174 614.0 432 69.9
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.2e-173 613.6 432 69.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.2e-173 613.6 442 69.0
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.2e-173 613.6 402 74.1
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.6e-173 613.2 402 74.4
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.6e-173 612.1 402 74.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.6e-173 612.1 412 72.3
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 4.9e-170 601.7 452 66.6
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.6e-168 596.7 459 64.9
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 4.5e-168 595.1 443 66.6
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 2.3e-167 592.8 454 63.9
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 2.3e-167 592.8 458 64.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.3e-166 588.6 445 66.1
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.0e-164 583.9 426 65.5
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 1.8e-164 583.2 385 73.2
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.4e-163 578.9 365 75.6
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 4.4e-163 578.6 385 74.3
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.1e-161 573.9 390 72.8
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.0e-160 569.7 425 67.1
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.9e-160 568.2 455 64.6
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 5.0e-159 565.1 391 71.9
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 3.3e-158 562.4 361 75.9
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.0e-152 543.1 392 70.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 6.6e-143 511.5 440 61.4
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.8e-141 506.1 424 59.9
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.2e-138 496.5 454 58.6
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.3e-134 482.6 440 55.2
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.1e-132 477.6 419 58.2
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.1e-126 457.6 438 56.2
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 2.1e-125 453.4 419 54.7
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 7.9e-120 434.9 232 90.5
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 9.6e-118 427.9 323 63.2
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.6e-107 393.3 288 66.7
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.2e-104 384.4 444 47.3
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 2.7e-104 383.3 233 79.8
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.5e-98 362.1 271 64.9
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 3.6e-96 356.3 427 44.7
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.1e-94 351.3 435 46.4
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.1e-92 343.2 383 47.5
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.0e-70 270.8 272 57.4
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 3.5e-67 260.0 165 78.8
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 6.3e-53 212.6 161 66.5
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.7e-46 189.5 113 81.4
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 5.8e-38 162.9 447 29.3
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.7e-37 161.4 90 84.4
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.4e-37 159.5 128 60.2
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 4.3e-33 146.7 438 27.9
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 8.9e-23 112.5 90 58.9
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 1.3e-21 108.6 56 96.4
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 4.1e-20 103.6 84 58.3
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.7e-10 71.6 79 49.4


User provided reference genes

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