Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 0.0e+00 1281.2 651 100.0
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 0.0e+00 1119.8 651 87.9
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 9.8e-302 1039.6 652 80.2
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 2.3e-298 1028.5 653 80.2
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 6.8e-295 1016.9 655 79.8
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 4.7e-280 967.6 652 75.5
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 2.4e-279 965.3 652 75.3
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 1.0e-274 949.9 662 75.4
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 2.6e-270 935.3 561 85.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 2.5e-257 892.1 655 72.7
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 3.7e-208 728.8 658 58.1
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.2e-206 723.8 658 58.4
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 2.7e-206 722.6 656 58.8
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 2.1e-203 713.0 658 56.8
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 3.8e-197 692.2 661 55.4
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 3.6e-195 685.6 687 54.9
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 8.0e-195 684.5 656 55.6
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 3.4e-193 679.1 667 54.3
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.3e-192 677.2 654 55.4
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 4.6e-190 668.7 652 55.1
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 3.0e-189 666.0 662 54.2
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 5.0e-189 665.2 641 54.9
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 8.6e-189 664.5 657 53.7
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 2.8e-187 659.4 662 54.1
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 8.0e-187 657.9 654 53.8
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 2.3e-186 656.4 706 53.4
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.2e-184 649.8 659 52.2
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 3.6e-179 632.5 639 53.5
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.2e-176 623.2 647 51.5
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 1.9e-175 620.2 680 50.7
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 3.2e-175 619.4 589 55.7
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 5.4e-175 618.6 638 51.6
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.1e-172 610.9 664 50.9
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 9.5e-172 607.8 660 50.9
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 1.2e-171 607.4 660 52.0
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 5.2e-170 602.1 660 50.8
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 2.0e-169 600.1 662 49.4
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 3.8e-168 595.9 662 48.8
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 5.4e-167 592.0 673 49.0
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 6.6e-165 585.1 665 48.4
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.9e-164 583.6 662 48.5
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 1.9e-164 583.6 665 48.6
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 3.3e-164 582.8 667 48.9
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 4.3e-164 582.4 670 49.0
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 4.3e-164 582.4 667 49.3
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 1.2e-163 580.9 530 57.4
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.4e-162 577.4 665 48.1
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 1.8e-162 577.0 670 48.4
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 4.0e-162 575.9 585 52.6
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 5.2e-162 575.5 671 48.3
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 2.0e-161 573.5 670 48.5
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 3.4e-161 572.8 663 48.3
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 5.8e-161 572.0 484 61.2
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 8.4e-160 568.2 752 44.0
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.6e-158 563.9 663 46.9
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 6.0e-158 562.0 781 43.4
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 7.8e-158 561.6 665 49.3
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 4.8e-155 552.4 670 47.2
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 3.1e-154 549.7 654 48.8
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 9.0e-154 548.1 595 50.1
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.2e-152 543.5 494 57.1
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 8.4e-152 541.6 643 46.8
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 4.6e-150 535.8 591 49.4
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.5e-148 530.8 616 47.7
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 5.6e-148 528.9 683 46.1
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 2.0e-145 520.4 668 45.2
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.8e-141 507.3 471 56.5
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 6.7e-141 505.4 665 45.1
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 1.4e-138 497.7 675 44.7
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.6e-134 484.2 603 45.9
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 1.9e-132 477.2 658 44.5
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 5.7e-132 475.7 422 56.2
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 2.2e-131 473.8 461 54.9
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 8.2e-131 471.9 516 49.8
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 5.5e-127 459.1 724 41.0
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 9.3e-127 458.4 657 43.5
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 6.7e-125 452.2 594 44.8
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 1.0e-120 438.3 720 39.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 8.5e-120 435.3 704 39.1
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.8e-117 427.6 696 37.9
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 9.1e-114 415.2 660 39.7
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 3.4e-113 413.3 681 39.2
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 3.9e-109 399.8 487 44.4
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 5.2e-109 399.4 255 80.0
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 2.8e-107 393.7 393 59.0
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 1.8e-106 391.0 393 59.0
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 4.8e-99 366.3 680 35.7
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.0e-96 358.6 800 33.8
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 8.3e-91 339.0 648 37.0
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 9.5e-87 325.5 377 49.1
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 2.8e-86 323.9 512 40.0
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.7e-86 323.2 512 40.0
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.6e-84 317.4 705 33.2
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 8.6e-80 302.4 194 75.8
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 1.6e-78 298.1 440 39.3
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 5.0e-72 276.6 262 56.9
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 3.6e-70 270.4 179 76.0
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 3.1e-69 267.3 472 38.1
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.4e-66 258.5 195 73.3
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 7.0e-66 256.1 263 54.8
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 2.9e-59 234.2 492 32.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.9e-58 231.5 339 43.4
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 7.1e-58 229.6 226 58.4
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 3.4e-52 210.7 171 66.7
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 9.9e-52 209.1 384 37.2
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 7.6e-36 156.4 263 32.7
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 9.3e-34 149.4 198 41.4
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 4.6e-25 120.6 132 52.3
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.0e-24 117.9 486 29.0
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.3e-19 102.4 512 21.9
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 1.1e-15 89.4 141 43.3
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.6e-14 85.5 94 46.8
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.6e-14 85.5 161 35.4
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 5.9e-12 77.0 95 40.0
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 4.8e-06 57.4 36 66.7


User provided reference genes

Program Settings